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Phylogenomic conflict analyses in the apple genus Malus s.l. reveal widespread hybridization and allopolyploidy driving diversification, with insights into the complex biogeographic history in the Northern Hemisphere 期刊论文
JOURNAL OF INTEGRATIVE PLANT BIOLOGY, 2022, 卷号: 64, 期号: 5, 页码: 1020-1043
作者:  Liu, Bin-Bin;  Ren, Chen;  Kwak, Myounghai;  Hodel, Richard G. J.;  Xu, Chao;  He, Jian;  Zhou, Wen-Bin;  Huang, Chien-Hsun;  Ma, Hong;  Qian, Guan-Ze;  Hong, De-Yuan;  Wen, Jun
Adobe PDF(3053Kb)  |  收藏  |  浏览/下载：14/0  |  提交时间：2024/03/07
deep genome skimming  genomic discordance  historical biogeography  massive extinction  reticulate evolution  single-copy nuclear genes  
Phylogenomic approaches untangle early divergences and complex diversifications of the olive plant family 期刊论文
BMC BIOLOGY, 2022, 卷号: 20, 期号: 1
作者:  Dong, Wenpan;  Li, Enze;  Liu, Yanlei;  Xu, Chao;  Wang, Yushuang;  Liu, Kangjia;  Cui, Xingyong;  Sun, Jiahui;  Suo, Zhili;  Zhang, Zhixiang;  Wen, Jun;  Zhou, Shiliang
Adobe PDF(4457Kb)  |  收藏  |  浏览/下载：12/0  |  提交时间：2024/03/07
Ancient introgression  Gene tree conflict  Incomplete lineage sorting  Oleaceae  Phylogenomics  Rate heterogeneity  
Phylogenomic relationships and species identification of the olive genus Olea (Oleaceae) 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2022, 卷号: 60, 期号: 6, 页码: 1263-1280
作者:  Dong, Wen-Pan;  Sun, Jia-Hui;  Liu, Yan-Lei;  Xu, Chao;  Wang, Yi-Heng;  Suo, Zhi-Li;  Zhou, Shi-Liang;  Zhang, Zhi-Xiang;  Wen, Jun
Adobe PDF(2070Kb)  |  收藏  |  浏览/下载：5/0  |  提交时间：2024/03/07
Olea  phylogenomics  specific DNA barcode  species identification  super-barcode  
The Chromosome-Based Rubber Tree Genome Provides New Insights into Spurge Genome Evolution and Rubber Biosynthesis 期刊论文
MOLECULAR PLANT, 2020, 卷号: 13, 期号: 2, 页码: 336-350
作者:  Liu, Jin;  Shi, Cong;  Shi, Cheng-Cheng;  Li, Wei;  Zhang, Qun-Jie;  Zhang, Yun;  Li, Kui;  Lu, Hui-Fang;  Shi, Chao;  Zhu, Si-Tao;  Xiao, Zai-Yun;  Nan, Hong;  Yue, Yao;  Zhu, Xun-Ge;  Wu, Yu;  Hong, Xiao-Ning;  Fan, Guang-Yi;  Tong, Yan;  Zhang, Dan;  Mao, Chang-Li;  Liu, Yun-Long;  Hao, Shi-Jie;  Liu, Wei-Qing;  Lv, Mei-Qi;  Zhang, Hai-Bin;  Liu, Yuan;  Hu-tang, Ge-Ran;  Wang, Jin-Peng;  Wang, Jia-Hao;  Sun, Ying-Huai;  Ni, Shu-Bang;  Chen, Wen-Bin;  Zhang, Xing-Cai;  Jiao, Yuan-Nian;  Eichler, Evan E.;  Li, Guo-Hua;  Liu, Xin;  Gao, Li-Zhi
Adobe PDF(2390Kb)  |  收藏  |  浏览/下载：168/0  |  提交时间：2022/03/01
rubber tree  rubber biosynthesis  chromosome evolution  whole-genome duplication  domestication  
Molecular phylogeny and species delimitation of Stachyuraceae: Advocating a herbarium specimen-based phylogenomic approach in resolving species boundaries 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2020, 卷号: 58, 期号: 5, 页码: 710-724
作者:  Su, Jun-Xia;  Dong, Cong-Cong;  Niu, Yan-Ting;  Lu, Li-Min;  Xu, Chao;  Liu, Bing;  Zhou, Shi-Liang;  Lu, An-Ming;  Zhu, Yu-Ping;  Wen, Jun;  Chen, Zhi-Duan
Adobe PDF(1772Kb)  |  收藏  |  浏览/下载：100/0  |  提交时间：2022/03/01
chloroplast genome  DNA reconstruction  phylogeny  specimen-based taxon sampling  Stachyuraceae  
Evolutionary directions of single nucleotide substitutions and structural mutations in the chloroplast genomes of the family Calycanthaceae 期刊论文
BMC EVOLUTIONARY BIOLOGY, 2020, 卷号: 20, 期号: 1
作者:  Dong, Wenpan;  Xu, Chao;  Wen, Jun;  Zhou, Shiliang
Adobe PDF(870Kb)  |  收藏  |  浏览/下载：89/0  |  提交时间：2022/03/01
Chloroplast genome  Calycanthaceae  Structural mutations  Substitution rate  Indels  
Transposable elements drive rapid phenotypic variation in Capsella rubella 期刊论文
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2019, 卷号: 116, 期号: 14, 页码: 6908-6913
作者:  Niu, Xiao-Min;  Xu, Yong-Chao;  Li, Zi-Wen;  Bian, Yu-Tao;  Hou, Xing-Hui;  Chen, Jia-Fu;  Zou, Yu-Pan;  Jiang, Juan;  Wu, Qiong;  Ge, Song;  Balasubramanian, Sureshkumar;  Guo, Ya-Long
Adobe PDF(1322Kb)  |  收藏  |  浏览/下载：143/0  |  提交时间：2022/01/06
Brassicaceae  Capsella rubella  natural variation  rapid phenotypic variation  transposable elements  
Phylogenomic analyses of the Photinia complex support the recognition of a new genus Phippsiomeles and the resurrection of a redefined Stranvaesia in Maleae (Rosaceae) 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2019, 卷号: 57, 期号: 6, 页码: 678-694
作者:  Liu, Bin-Bin;  Hong, De-Yuan;  Zhou, Shi-Liang;  Xu, Chao;  Dong, Wen-Pan;  Johnson, Gabriel;  Wen, Jun
Adobe PDF(1734Kb)  |  收藏  |  浏览/下载：101/0  |  提交时间：2022/01/06
genome skimming  hybridization  Maleae  nrDNA  Phippsiomeles  Rosaceae  Stranvaesia  
Transposable Elements Contribute to the Adaptation of Arabidopsis thaliana 期刊论文
GENOME BIOLOGY AND EVOLUTION, 2018, 卷号: 10, 期号: 8, 页码: 2140-2150
作者:  Li, Zi-Wen;  Hou, Xing-Hui;  Chen, Jia-Fu;  Xu, Yong-Chao;  Wu, Qiong;  Gonzalez, Josefa;  Guo, Ya-Long
Adobe PDF(797Kb)  |  收藏  |  浏览/下载：83/0  |  提交时间：2022/02/25
Arabidopsis thaliana  population genomics  adaptation  transposable elements (TEs)  
Long-term balancing selection contributes to adaptation in Arabidopsis and its relatives 期刊论文
GENOME BIOLOGY, 2017, 卷号: 18
作者:  Wu, Qiong;  Han, Ting-Shen;  Chen, Xi;  Chen, Jia-Fu;  Zou, Yu-Pan;  Li, Zi-Wen;  Xu, Yong-Chao;  Guo, Ya-Long
Adobe PDF(3786Kb)  |  收藏  |  浏览/下载：86/0  |  提交时间：2022/03/28
Adaptation  Arabidopsis thaliana  Balancing selection  Capsella rubella  Trans-species polymorphism