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Plastid phylogenomic analyses of the Selaginella sanguinolenta group (Selaginellaceae) reveal conflict signatures resulting from sequence types, outlier genes, and pervasive RNA editing 期刊论文
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2022, 卷号: 173
作者:  Zhang, Meng-Hua;  Xiang, Qiao-Ping;  Zhang, Xian-Chun
Adobe PDF(5084Kb)  |  收藏  |  浏览/下载：12/0  |  提交时间：2024/03/07
Alternative topologies  Gene-tree conflict  Plastome  Phylogenetic signal  Selaginella sanguinolenta group  Species trees  
Phylogeny of Diplazium (Athyriaceae) revisited: Resolving the backbone relationships based on plastid genomes and phylogenetic tree space analysis 期刊论文
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2020, 卷号: 143
作者:  Wei, Ran;  Zhang, Xian-Chun
Adobe PDF(367Kb)  |  收藏  |  浏览/下载：101/0  |  提交时间：2022/03/01
Backbone  Diplazium  Evolutionary radiation  Plastome  Phylogenetic clustering  
Plastome-based phylogenomics resolves the placement of the sanguinolenta group in the spikemoss of lycophyte (Selaginellaceae) 期刊论文
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2020, 卷号: 147
作者:  Zhang, Hong-Rui;  Wei, Ran;  Xiang, Qiao-Ping;  Zhang, Xian-Chun
Adobe PDF(1456Kb)  |  收藏  |  浏览/下载：93/0  |  提交时间：2022/03/01
GC content  Nucleotide substitution rate  Phylogeny  Plastome  Sanguinolenta group  
Directed Repeats Co-occur with Few Short-Dispersed Repeats in Plastid Genome of a Spikemoss, Selaginella vardei (Selaginellaceae, Lycopodiopsida) 期刊论文
BMC GENOMICS, 2019, 卷号: 20
作者:  Zhang, Hong-Rui;  Zhang, Xian-Chun;  Xiang, Qiao-Ping
Adobe PDF(1747Kb)  |  收藏  |  浏览/下载：80/0  |  提交时间：2022/01/06
direct repeat  inversion  inverted repeat  plastome evolution  short dispersed repeats  
Directed Repeats Co-occur with Few Short-Dispersed Repeats in Plastid Genome of a Spikemoss, Selaginella vardei (Selaginellaceae, Lycopodiopsida) (vol 20, pg 484, 2019) 期刊论文
BMC GENOMICS, 2019, 卷号: 20
作者:  Zhang, Hong-Rui;  Zhang, Xian-Chun;  Xiang, Qiao-Ping
Adobe PDF(601Kb)  |  收藏  |  浏览/下载：91/0  |  提交时间：2022/01/06
The Unique Evolutionary Trajectory and Dynamic Conformations of DR and IR/DR-Coexisting Plastomes of the Early Vascular Plant Selaginellaceae (Lycophyte) 期刊论文
GENOME BIOLOGY AND EVOLUTION, 2019, 卷号: 11, 期号: 4, 页码: 1258-1274
作者:  Zhang, Hong-Rui;  Xiang, Qiao-Ping;  Zhang, Xian-Chun
Adobe PDF(1212Kb)  |  收藏  |  浏览/下载：87/0  |  提交时间：2022/01/06
gene loss  homologous recombination  DR/IR evolution  Selaginella  substitution rate  time divergence  
The complete chloroplast genome sequence of a typical alpine fern Lepisorus waltonii (Ching) S. L. Yu in Polypodiaceae 期刊论文
MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 卷号: 4, 期号: 1, 页码: 801-803
作者:  Wang, Ya-Rong;  Zhao, Cun-Feng;  Yu, Xu-Dong;  Zhang, Xian-Chun
Adobe PDF(938Kb)  |  收藏  |  浏览/下载：82/0  |  提交时间：2022/01/06
Lepisorus waltonii  alpine fern  Polypodiaceae  chloroplast genome  
Hiya: A new genus segregated from Hypolepis in the fern family Dennstaedtiaceae, based on phylogenetic evidence and character evolution 期刊论文
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2018, 卷号: 127, 页码: 449-458
作者:  Shang, Hui;  Sundue, Michael;  Wei, Ran;  Wei, Xue-Ping;  Luo, Jun-Jie;  Liu, Li;  Schwartsburd, Pedro;  Yan, Yue-Hong;  Zhang, Xian-Chun
Adobe PDF(2915Kb)  |  收藏  |  浏览/下载：73/0  |  提交时间：2022/02/25
Hiya brooksiae  Hiya nigrescens  Hiya scabristipes  Morphology  Phylogeny  Systematics  
A total-evidence phylogeny of the lady fern genus Athyrium Roth (Athyriaceae) with a new infrageneric classification 期刊论文
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2018, 卷号: 119, 页码: 25-36
作者:  Wei, Ran;  Ebihara, Atsushi;  Zhu, Yan-Mei;  Zhao, Cun-Feng;  Hennequin, Sabine;  Zhang, Xian-Chun
Adobe PDF(2682Kb)  |  收藏  |  浏览/下载：99/0  |  提交时间：2022/02/25
Anisocampium  Chloroplast  Cornopteris  Molecular phylogeny  Pseudathyrium  Synapomorphy  
Phylogenetic relationships, possible ancient hybridization, and biogeographic history of Abies (Pinaceae) based on data from nuclear, plastid, and mitochondrial genomes 期刊论文
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2015, 卷号: 82, 页码: 1-14
作者:  Xiang, Qiao-Ping;  Wei, Ran;  Shao, Yi-Zhen;  Yang, Zu-Yu;  Wang, Xiao-Quan;  Zhang, Xian-Chun
Adobe PDF(3156Kb)  |  收藏  |  浏览/下载：76/0  |  提交时间：2022/09/13
Ancient hybridization  Genome conflict  Northern hemisphere disjunction  Out of western North America  Section Balsamea