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Phylogenomic conflict analyses in the apple genus Malus s.l. reveal widespread hybridization and allopolyploidy driving diversification, with insights into the complex biogeographic history in the Northern Hemisphere 期刊论文
JOURNAL OF INTEGRATIVE PLANT BIOLOGY, 2022, 卷号: 64, 期号: 5, 页码: 1020-1043
作者:  Liu, Bin-Bin;  Ren, Chen;  Kwak, Myounghai;  Hodel, Richard G. J.;  Xu, Chao;  He, Jian;  Zhou, Wen-Bin;  Huang, Chien-Hsun;  Ma, Hong;  Qian, Guan-Ze;  Hong, De-Yuan;  Wen, Jun
Adobe PDF(3053Kb)  |  收藏  |  浏览/下载：14/0  |  提交时间：2024/03/07
deep genome skimming  genomic discordance  historical biogeography  massive extinction  reticulate evolution  single-copy nuclear genes  
Out of the Pan-Himalaya: Evolutionary history of the Paeoniaceae revealed by phylogenomics 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2021, 卷号: 59, 期号: 6, 页码: 1170-1182
作者:  Zhou, Shi-Liang;  Xu, Chao;  Liu, Jing;  Yu, Yan;  Wu, Ping;  Cheng, Tao;  Hong, De-Yuan
Adobe PDF(1288Kb)  |  收藏  |  浏览/下载：65/0  |  提交时间：2023/02/24
biogeography  molecular dating  Paeonia  phylogeny  reticulate evolution  
Capturing single-copy nuclear genes, organellar genomes, and nuclear ribosomal DNA from deep genome skimming data for plant phylogenetics: A case study in Vitaceae 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2021, 卷号: 59, 期号: 5, 页码: 1124-1138
作者:  Liu, Bin-Bin;  Ma, Zhi-Yao;  Ren, Chen;  Hodel, Richard G. J.;  Sun, Miao;  Liu, Xiu-Qun;  Liu, Guang-Ning;  Hong, De-Yuan;  Zimmer, Elizabeth A.;  Wen, Jun
Adobe PDF(2650Kb)  |  收藏  |  浏览/下载：69/0  |  提交时间：2023/02/24
deep genome skimming  Hyb-Seq  mitochondrial genes  nuclear ribosomal DNA  single-copy nuclear genes  Vitaceae  
Gen-morph species concept-A new and integrative species concept for outbreeding organisms 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2020, 卷号: 58, 期号: 5, 页码: 725-742
作者:  Hong, De-Yuan
Adobe PDF(5144Kb)  |  收藏  |  浏览/下载：104/0  |  提交时间：2022/03/01
continuous or discontinuous variations  cross-compatible  gene flow  isolation  lineage  monophyly  outbreeding organism  PaeoniaL  statistics  
A synopsis of the expanded Rhaphiolepis (Maleae, Rosaceae) 期刊论文
PHYTOKEYS, 2020, 期号: 154, 页码: 19-55
作者:  Liu, Bin-Bin;  Wang, Yu-Bing;  Hong, De-Yuan;  Wen, Jun
Adobe PDF(2482Kb)  |  收藏  |  浏览/下载：98/0  |  提交时间：2022/03/01
Eriobotrya  lectotype  new name  nomenclature  taxonomy  typification  validation  
Phylogenetic relationships and chloroplast capture in the Amelanchier-Malacomeles-Peraphyllum clade (Maleae, Rosaceae): Evidence from chloroplast genome and nuclear ribosomal DNA data using genome skimming 期刊论文
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2020, 卷号: 147
作者:  Liu, Bin-Bin;  Campbell, Christopher S.;  Hong, De-Yuan;  Wen, Jun
Adobe PDF(2972Kb)  |  收藏  |  浏览/下载：93/0  |  提交时间：2022/03/01
Chloroplast capture  Hybridization  Maleae  Nuclear ribosomal DNA  Plastome  Rosaceae  
Typification of 23 names in Eriobotrya (Maleae, Rosaceae) 期刊论文
PHYTOKEYS, 2020, 期号: 139, 页码: 99-118
作者:  Liu, Bin-Bin;  Liu, Guang-Ning;  Hong, De-Yuan;  Wen, Jun
Adobe PDF(286Kb)  |  收藏  |  浏览/下载：92/0  |  提交时间：2022/03/01
integrative systematics  lectotype  loquat  neotype  nomenclature  Pyrus  Rhaphiolepis  taxonomy  
Eriobotrya Belongs to Rhaphiolepis (Maleae, Rosaceae): Evidence From Chloroplast Genome and Nuclear Ribosomal DNA Data 期刊论文
FRONTIERS IN PLANT SCIENCE, 2020, 卷号: 10
作者:  Liu, Bin-Bin;  Liu, Guang-Ning;  Hong, De-Yuan;  Wen, Jun
Adobe PDF(2906Kb)  |  收藏  |  浏览/下载：81/0  |  提交时间：2022/03/01
chloroplast genome  Eriobotrya  hybridization  Maleae  nrDNA  Rhaphiolepis  Rosaceae  
A special issue to mark the 90th Anniversary of College of Life Sciences, Zhejiang University 期刊论文
JOURNAL OF ZHEJIANG UNIVERSITY-SCIENCE B, 2019, 卷号: 20, 期号: 5, 页码: 371-372
作者:  Peng, Jin-rong;  Guan, Kun-liang;  Hong, De-yuan;  Lin, Xin-hua;  Yang, Huan-ming;  Zhu, Yu-xian
Adobe PDF(418Kb)  |  收藏  |  浏览/下载：77/0  |  提交时间：2022/01/06
Phylogenomic analyses of the Photinia complex support the recognition of a new genus Phippsiomeles and the resurrection of a redefined Stranvaesia in Maleae (Rosaceae) 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2019, 卷号: 57, 期号: 6, 页码: 678-694
作者:  Liu, Bin-Bin;  Hong, De-Yuan;  Zhou, Shi-Liang;  Xu, Chao;  Dong, Wen-Pan;  Johnson, Gabriel;  Wen, Jun
Adobe PDF(1734Kb)  |  收藏  |  浏览/下载：103/0  |  提交时间：2022/01/06
genome skimming  hybridization  Maleae  nrDNA  Phippsiomeles  Rosaceae  Stranvaesia