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Integrated phylogenomic analyses unveil reticulate evolution in Parthenocissus (Vitaceae), highlighting speciation dynamics in the Himalayan-Hengduan Mountains 期刊论文
NEW PHYTOLOGIST, 2023, 卷号: 238, 期号: 2, 页码: 888-903
Authors:  Yu, Jinren;  Niu, Yanting;  You, Yichen;  Cox, Cymon J.;  Barrett, Russell L.;  Trias-Blasi, Anna;  Guo, Jing;  Wen, Jun;  Lu, Limin;  Chen, Zhiduan
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biogeography  comprehensive approach  Himalayan-Hengduan Mountains region  Parthenocissus  phylogenetic discordance  reticulation  speciation reversal  
Species delimitation of the liquorice tribe (Leguminosae: Glycyrrhizeae) based on phylogenomic and machine learning analyses 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2023, 卷号: 61, 期号: 1, 页码: 22-41
Authors:  Duan, Lei;  Han, Li-Na;  Liu, Bin-Bin;  Leostrin, Artem;  Harris, A. J.;  Wang, Lin;  Arslan, Emine;  Ertugrul, Kuddisi;  Knyazev, Mikhail;  Hantemirova, Elena;  Wen, Jun;  Chen, Hong-Feng
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character evolution  Glycyrrhiza  machine learning analysis  medicinal group  phylogenomics  species delimitation  
The response of two nutrient acquisition strategies: root traits and leaf nutrient resorption and their relationships to long-term mowing in a temperate steppe 期刊论文
PLANT AND SOIL, 2023, 卷号: 491, 期号: 1-2, 页码: 191-203
Authors:  Li, Qingmei;  Bai, Wenming;  Guo, Yumeng;  Sheng, Jun;  Yuan, Yujia;  Zhang, Wen-Hao;  Zhou, Meng
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Leaf nutrient resorption  Long-term mowing  Nutrient acquisition strategy  Root traits  Temperate steppe  
Long-term mowing reinforces connections between soil microbial and plant communities in a temperate steppe 期刊论文
PLANT AND SOIL, 2023, 卷号: 491, 期号: 1-2, 页码: 177-190
Authors:  Bai, Ren;  Zhou, Meng;  Guo, Yumeng;  Sheng, Jun;  Yuan, Yujia;  Li, Qingmei;  Hou, Longyu;  Bai, Wenming
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Plant community  Soil microbiota  Protists  Temperate steppe  Mowing  
Mapping Chinese annual gross primary productivity with eddy covariance measurements and machine learning 期刊论文
SCIENCE OF THE TOTAL ENVIRONMENT, 2023, 卷号: 857
Authors:  Zhu, Xian-Jin;  Yu, Gui-Rui;  Chen, Zhi;  Zhang, Wei-Kang;  Han, Lang;  Wang, Qiu-Feng;  Chen, Shi-Ping;  Liu, Shao-Min;  Yan, Jun-Hua;  Zhang, Fa -Wei;  Zhao, Feng-Hua;  Li, Ying-Nian;  Zhang, Yi-Ping;  Shi, Pei -Li;  Zhu, Jiao-Jun;  Wu, Jia-Bing;  Zhao, Zhong-Hui;  Hao, Yan-Bin;  Sha, Li-Qing;  Zhang, Yu-Cui;  Jiang, Shi-Cheng;  Gu, Feng-Xue;  Wu, Zhi-Xiang;  Wang, Hui-Min;  Tan, Jun-Lei;  Zhang, Yang-Jian;  Zhou, Li;  Tang, Ya-Kun;  Jia, Bing-Rui;  Li, Yu-Qiang;  Song, Qing-Hai;  Dong, Gang;  Gao, Yan-Hong;  Jiang, Zheng-De;  Sun, Dan;  Wang, Jian-Lin;  He, Qi-Hua;  Li, Xin-Hu;  Wang, Fei;  Wei, Wen-Xue;  Deng, Zheng-Miao;  Hao, Xiang-Xiang;  Li, Yan;  Liu, Xiao-Li;  Zhang, Xi-Feng;  Zhu, Zhi-Lin
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Carbon cycle  Climate change  Eddy covariance  Terrestrial ecosystem  Machine learning  Scale extension  
Evolution of the CBL and CIPK gene families in Medicago: genome-wide characterization, pervasive duplication, and expression pattern under salt and drought stress 期刊论文
BMC PLANT BIOLOGY, 2022, 卷号: 22, 期号: 1
Authors:  Zhang, Xiao-Xia;  Ren, Xiao-Long;  Qi, Xiao-Tong;  Yang, Zhi-Min;  Feng, Xiao-Lei;  Zhang, Tian;  Wang, Hui-Jie;  Liang, Peng;  Jiang, Qi-Ying;  Yang, Wen-Jun;  Fu, Yuan;  Chen, Min;  Fu, Zhi-Xi;  Xu, Bo
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Calcineurin B-like protein (CBL)  CBL-interacting protein kinase (CIPK)  Gene family evolution  Duplicate genes  Stress response  Medicago  
Phylogenomic conflict analyses in the apple genus Malus s.l. reveal widespread hybridization and allopolyploidy driving diversification, with insights into the complex biogeographic history in the Northern Hemisphere 期刊论文
JOURNAL OF INTEGRATIVE PLANT BIOLOGY, 2022, 卷号: 64, 期号: 5, 页码: 1020-1043
Authors:  Liu, Bin-Bin;  Ren, Chen;  Kwak, Myounghai;  Hodel, Richard G. J.;  Xu, Chao;  He, Jian;  Zhou, Wen-Bin;  Huang, Chien-Hsun;  Ma, Hong;  Qian, Guan-Ze;  Hong, De-Yuan;  Wen, Jun
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deep genome skimming  genomic discordance  historical biogeography  massive extinction  reticulate evolution  single-copy nuclear genes  
Plastome-based phylogeny improves community phylogenetics of subtropical forests in China 期刊论文
MOLECULAR ECOLOGY RESOURCES, 2022, 卷号: 22, 期号: 1, 页码: 319-333
Authors:  Jin, Lu;  Liu, Jia-Jia;  Xiao, Tian-Wen;  Li, Qiao-Ming;  Lin, Li-Xiang;  Shao, Xiao-Na;  Ma, Chen-Xin;  Li, Bu-Hang;  Mi, Xiang-Cheng;  Ren, Hai-Bao;  Qiao, Xiu-Juan;  Lian, Ju-Yu;  Hao, Gang;  Ge, Xue-Jun
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alpha diversity  community phylogeny  DNA barcoding  phylogenetic community structure  phylogenetic phylogenetic beta diversity  phylogenetic signal  plastid genome  
Using anatomical traits to understand root functions across root orders of herbaceous species in a temperate steppe 期刊论文
NEW PHYTOLOGIST, 2022, 卷号: 234, 期号: 2, 页码: 422-434
Authors:  Zhou, Meng;  Guo, Yumeng;  Sheng, Jun;  Yuan, Yujia;  Zhang, Wen-Hao;  Bai, Wenming
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dicotyledons  herbaceous species  monocotyledons  root anatomy  root coordinating strategies  
The transcription factor OsGATA6 regulates rice heading date and grain number per panicle 期刊论文
JOURNAL OF EXPERIMENTAL BOTANY, 2022, 卷号: 73, 期号: 18, 页码: 6133-6149
Authors:  Zhang, Yan-Jie;  Zhang, Yu;  Zhang, Liang-Li;  He, Jun-Xian;  Xue, Hong-Wei;  Wang, Jia-Wei;  Lin, Wen-Hui
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Florigen  GATA transcription factor  grain number per panicle  grain size  heading date  Oryza sativa  rice