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Evolutionary strategies drive a balance of the interacting gene products for the CBL and CIPK gene families 期刊论文
NEW PHYTOLOGIST, 2020, 卷号: 226, 期号: 5, 页码: 1506-1516
Authors:  Zhang, Xiaoxia;  Li, Xiaoxia;  Zhao, Ran;  Zhou, Yun;  Jiao, Yuannian
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calcineurin B-like (CBL)  CBL-interacting protein kinase (CIPK)  gene balance hypothesis (GBH)  gene retention  whole-genome duplication (WGD)  
The Chromosome-Based Rubber Tree Genome Provides New Insights into Spurge Genome Evolution and Rubber Biosynthesis 期刊论文
MOLECULAR PLANT, 2020, 卷号: 13, 期号: 2, 页码: 336-350
Authors:  Liu, Jin;  Shi, Cong;  Shi, Cheng-Cheng;  Li, Wei;  Zhang, Qun-Jie;  Zhang, Yun;  Li, Kui;  Lu, Hui-Fang;  Shi, Chao;  Zhu, Si-Tao;  Xiao, Zai-Yun;  Nan, Hong;  Yue, Yao;  Zhu, Xun-Ge;  Wu, Yu;  Hong, Xiao-Ning;  Fan, Guang-Yi;  Tong, Yan;  Zhang, Dan;  Mao, Chang-Li;  Liu, Yun-Long;  Hao, Shi-Jie;  Liu, Wei-Qing;  Lv, Mei-Qi;  Zhang, Hai-Bin;  Liu, Yuan;  Hu-tang, Ge-Ran;  Wang, Jin-Peng;  Wang, Jia-Hao;  Sun, Ying-Huai;  Ni, Shu-Bang;  Chen, Wen-Bin;  Zhang, Xing-Cai;  Jiao, Yuan-Nian;  Eichler, Evan E.;  Li, Guo-Hua;  Liu, Xin;  Gao, Li-Zhi
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rubber tree  rubber biosynthesis  chromosome evolution  whole-genome duplication  domestication  
A Collinearity-Incorporating Homology Inference Strategy for Connecting Emerging Assemblies in the Triticeae Tribe as a Pilot Practice in the Plant Pangenomic Era 期刊论文
MOLECULAR PLANT, 2020, 卷号: 13, 期号: 12, 页码: 1694-1708
Authors:  Chen, Yongming;  Song, Wanjun;  Xie, Xiaoming;  Wang, Zihao;  Guan, Panfeng;  Peng, Huiru;  Jiao, Yuannian;  Ni, Zhongfu;  Sun, Qixin;  Guo, Weilong
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homology inference  collinearity  database  pangenome  Triticeae tribe  polyploid  
The ancient wave of polyploidization events in flowering plants and their facilitated adaptation to environmental stress 期刊论文
PLANT CELL AND ENVIRONMENT, 2020, 卷号: 43, 期号: 12, 页码: 2847-2856
Authors:  Zhang, Liangsheng;  Wu, Shengdan;  Chang, Xiaojun;  Wang, Xiuyun;  Zhao, Yunpeng;  Xia, Yiping;  Trigiano, Robert N.;  Jiao, Yuannian;  Chen, Fei
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angiosperms  gene duplication  polyploidy  Nymphaeales  
In silico identification and structure function analysis of a putative coclaurine N-methyltransferase from Aristolochia fimbriata 期刊论文
COMPUTATIONAL BIOLOGY AND CHEMISTRY, 2020, 卷号: 85
Authors:  Ali, Roshan;  Jiao, Yuannian;  Wall, P. Kerr;  Patching, Simon G.;  Ahmad, Irshad;  Lutfulla, Ghosia;  dePamphilis, Claude W.
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Coclaurine N-methyltransferase  Aristolochia fimbriata  Basal angiosperm  Aristolochic acid  Reaction mechanism  Homology model  
Genetic Contribution of Paleopolyploidy to Adaptive Evolution in Angiosperms 期刊论文
MOLECULAR PLANT, 2020, 卷号: 13, 期号: 1, 页码: 59-71
Authors:  Wu, Shengdan;  Han, Baocai;  Jiao, Yuannian
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whole-genome duplication  paleopolyploidy  adaptive evolution  phylogenomic  Cretaceous-Paleocene boundary  gene regulatory network  
The hornwort genome and early land plant evolution 期刊论文
NATURE PLANTS, 2020, 卷号: 6, 期号: 2, 页码: 107-118
Authors:  Zhang, Jian;  Fu, Xin-Xing;  Li, Rui-Qi;  Zhao, Xiang;  Liu, Yang;  Li, Ming-He;  Zwaenepoel, Arthur;  Ma, Hong;  Goffinet, Bernard;  Guan, Yan-Long;  Xue, Jia-Yu;  Liao, Yi-Ying;  Wang, Qing-Feng;  Wang, Qing-Hua;  Wang, Jie-Yu;  Zhang, Guo Qiang;  Wang, Zhi-Wen;  Jia, Yu;  Wang, Mei-Zhi;  Dong, Shan-Shan;  Yang, Jian-Fen;  Jiao, Yuan-Nian;  Guo, Ya-Long;  Kong, Hong-Zhi;  Lu, An-Ming;  Yang, Huan-Ming;  Zhang, Shou-Zhou;  Van de Peer, Yves;  Liu, Zhong-Jian;  Chen, Zhi-Duan
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A chromosome-scale reference genome of Aquilegia oxysepala var. kansuensis 期刊论文
HORTICULTURE RESEARCH, 2020, 卷号: 7, 期号: 1
Authors:  Xie, Jinghe;  Zhao, Haifeng;  Li, Kunpeng;  Zhang, Rui;  Jiang, Yongchao;  Wang, Meimei;  Guo, Xuelian;  Yu, Ben;  Kong, Hongzhi;  Jiao, Yuannian;  Xu, Guixia
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The water lily genome and the early evolution of flowering plants 期刊论文
NATURE, 2020, 卷号: 577, 页码: 79-84
Authors:  Zhang, Liangsheng;  Chen, Fei;  Zhang, Xingtan;  Li, Zhen;  Zhao, Yiyong;  Lohaus, Rolf;  Chang, Xiaojun;  Dong, Wei;  Ho, Simon Y. W.;  Liu, Xing;  Song, Aixia;  Chen, Junhao;  Guo, Wenlei;  Wang, Zhengjia;  Zhuang, Yingyu;  Wang, Haifeng;  Chen, Xuequn;  Hu, Juan;  Liu, Yanhui;  Qin, Yuan;  Wang, Kai;  Dong, Shanshan;  Liu, Yang;  Zhang, Shouzhou;  Yu, Xianxian;  Wu, Qian;  Wang, Liangsheng;  Yan, Xueqing;  Jiao, Yuannian;  Kong, Hongzhi;  Zhou, Xiaofan;  Yu, Cuiwei;  Chen, Yuchu;  Li, Fan;  Wang, Jihua;  Chen, Wei;  Chen, Xinlu;  Jia, Qidong;  Zhang, Chi;  Jiang, Yifan;  Zhang, Wanbo;  Liu, Guanhua;  Fu, Jianyu;  Chen, Feng;  Ma, Hong;  Van de Peer, Yves;  Tang, Haibao
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The Tetracentron genome provides insight into the early evolution of eudicots and the formation of vessel elements 期刊论文
GENOME BIOLOGY, 2020, 卷号: 21, 期号: 1
Authors:  Liu, Ping-Li;  Zhang, Xi;  Mao, Jian-Feng;  Hong, Yan-Ming;  Zhang, Ren-Gang;  Yilan, E.;  Nie, Shuai;  Jia, Kaihua;  Jiang, Chen-Kun;  He, Jian;  Shen, Weiwei;  He, Qizouhong;  Zheng, Wenqing;  Abbas, Samar;  Jewaria, Pawan Kumar;  Tian, Xuechan;  Liu, Chang-jun;  Jiang, Xiaomei;  Yin, Yafang;  Liu, Bo;  Wang, Li;  Jin, Biao;  Ma, Yongpeng;  Qiu, Zongbo;  Baluska, Frantisek;  Samaj, Jozef;  He, Xinqiang;  Niu, Shihui;  Xie, Jianbo;  Xie, Lei;  Xu, Huimin;  Kong, Hongzhi;  Ge, Song;  Dixon, Richard A.;  Jiao, Yuannian;  Lin, Jinxing
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Tetracentron sinense  Vessel  Phylogenomic  Whole genome duplication  VND7  Resequencing  Genetic diversity