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Plastome-based phylogenomics resolves the placement of the sanguinolenta group in the spikemoss of lycophyte (Selaginellaceae) 期刊论文
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2020, 卷号: 147
Authors:  Zhang, Hong-Rui;  Wei, Ran;  Xiang, Qiao-Ping;  Zhang, Xian-Chun
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GC content  Nucleotide substitution rate  Phylogeny  Plastome  Sanguinolenta group  
Distinctive evolutionary pattern of organelle genomes linked to the nuclear genome in Selaginellaceae 期刊论文
PLANT JOURNAL, 2020, 卷号: 104, 期号: 6, 页码: 1657-1672
Authors:  Kang, Jong-Soo;  Zhang, Hong-Rui;  Wang, Ya-Rong;  Liang, Si-Qi;  Mao, Zhi-Yuan;  Zhang, Xian-Chun;  Xiang, Qiao-Ping
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Selaginella  plastid genome  mitochondrial genome  genome evolution  convergent evolution  RecA  
Parallel evolution of apetalous lineages within the buttercup family (Ranunculaceae): outward expansion ofAGAMOUS1, rather than disruption ofAPETALA3-3 期刊论文
PLANT JOURNAL, 2020, 卷号: 104, 期号: 5, 页码: 1169-1181
Authors:  Duan, Xiaoshan;  Zhao, Caiyao;  Jiang, Yongchao;  Zhang, Rui;  Shan, Hongyan;  Kong, Hongzhi
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parallel evolution  petal loss  homeotic transformation  organ identity program  Ranunculaceae  
Identification of the target genes of AqAPETALA3-3 (AqAP3-3) in Aquilegia coerulea (Ranunculaceae) helps understand the molecular bases of the conserved and nonconserved features of petals 期刊论文
NEW PHYTOLOGIST, 2020, 卷号: 227, 期号: 4, 页码: 1235-1248
Authors:  Jiang, Yongchao;  Wang, Meimei;  Zhang, Rui;  Xie, Jinghe;  Duan, Xiaoshan;  Shan, Hongyan;  Xu, Guixia;  Kong, Hongzhi
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Aquilegia  binding sites  ChIP-seq  floral organ identity genes  petals  target genes  
The hornwort genome and early land plant evolution 期刊论文
NATURE PLANTS, 2020, 卷号: 6, 期号: 2, 页码: 107-118
Authors:  Zhang, Jian;  Fu, Xin-Xing;  Li, Rui-Qi;  Zhao, Xiang;  Liu, Yang;  Li, Ming-He;  Zwaenepoel, Arthur;  Ma, Hong;  Goffinet, Bernard;  Guan, Yan-Long;  Xue, Jia-Yu;  Liao, Yi-Ying;  Wang, Qing-Feng;  Wang, Qing-Hua;  Wang, Jie-Yu;  Zhang, Guo Qiang;  Wang, Zhi-Wen;  Jia, Yu;  Wang, Mei-Zhi;  Dong, Shan-Shan;  Yang, Jian-Fen;  Jiao, Yuan-Nian;  Guo, Ya-Long;  Kong, Hong-Zhi;  Lu, An-Ming;  Yang, Huan-Ming;  Zhang, Shou-Zhou;  Van de Peer, Yves;  Liu, Zhong-Jian;  Chen, Zhi-Duan
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A chromosome-scale reference genome of Aquilegia oxysepala var. kansuensis 期刊论文
HORTICULTURE RESEARCH, 2020, 卷号: 7, 期号: 1
Authors:  Xie, Jinghe;  Zhao, Haifeng;  Li, Kunpeng;  Zhang, Rui;  Jiang, Yongchao;  Wang, Meimei;  Guo, Xuelian;  Yu, Ben;  Kong, Hongzhi;  Jiao, Yuannian;  Xu, Guixia
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A role for the Auxin Response Factors ARF6 and ARF8 homologs in petal spur elongation and nectary maturation in Aquilegia 期刊论文
NEW PHYTOLOGIST, 2020, 卷号: 227, 期号: 5, 页码: 1392-1405
Authors:  Zhang, Rui;  Min, Ya;  Holappa, Lynn D.;  Walcher-Chevillet, Cristina L.;  Duan, Xiaoshan;  Donaldson, Emily;  Kong, Hongzhi;  Kramer, Elena M.
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Aquilegia  Auxin Response Factor  cell elongation  nectary development  petal spur  
Identification of the Key Regulatory Genes Involved in Elaborate Petal Development and Specialized Character Formation in Nigella damascena (Ranunculaceae)([OPEN]) 期刊论文
PLANT CELL, 2020, 卷号: 32, 期号: 10, 页码: 3095-3112
Authors:  Zhang, Rui;  Fu, Xuehao;  Zhao, Caiyao;  Cheng, Jie;  Liao, Hong;  Wang, Peipei;  Yao, Xu;  Duan, Xiaoshan;  Yuan, Yi;  Xu, Guixia;  Kramer, Elena M.;  Shan, Hongyan;  Kong, Hongzhi
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The morphology, molecular development and ecological function of pseudonectaries on Nigella damascena (Ranunculaceae) petals 期刊论文
NATURE COMMUNICATIONS, 2020, 卷号: 11, 期号: 1
Authors:  Liao, Hong;  Fu, Xuehao;  Zhao, Huiqi;  Cheng, Jie;  Zhang, Rui;  Yao, Xu;  Duan, Xiaoshan;  Shan, Hongyan;  Kong, Hongzhi
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Resequencing 545 ginkgo genomes across the world reveals the evolutionary history of the living fossil 期刊论文
NATURE COMMUNICATIONS, 2019, 卷号: 10
Authors:  Zhao, Yun-Peng;  Fan, Guangyi;  Yin, Ping-Ping;  Sun, Shuai;  Li, Ning;  Hong, Xiaoning;  Hu, Gang;  Zhang, He;  Zhang, Fu-Min;  Han, Jing-Dan;  Hao, Ya-Jun;  Xu, Qiwu;  Yang, Xianwei;  Xia, Wenjie;  Chen, Wenbin;  Lin, Han-Yang;  Zhang, Rui;  Chen, Jiang;  Zheng, Xiao-Ming;  Lee, Simon Ming-Yuen;  Lee, Joongku;  Uehara, Koichi;  Wang, Jian;  Yang, Huanming;  Fu, Cheng-Xin;  Liu, Xin;  Xu, Xun;  Ge, Song
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