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Phylogenomic conflict analyses in the apple genus Malus s.l. reveal widespread hybridization and allopolyploidy driving diversification, with insights into the complex biogeographic history in the Northern Hemisphere
期刊论文
JOURNAL OF INTEGRATIVE PLANT BIOLOGY, 2022, 卷号: 64, 期号: 5, 页码: 1020-1043
Authors:
Liu, Bin-Bin
;
Ren, Chen
;
Kwak, Myounghai
;
Hodel, Richard G. J.
;
Xu, Chao
;
He, Jian
;
Zhou, Wen-Bin
;
Huang, Chien-Hsun
;
Ma, Hong
;
Qian, Guan-Ze
;
Hong, De-Yuan
;
Wen, Jun
Adobe PDF(3053Kb)
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Submit date:2024/03/07
deep genome skimming
genomic discordance
historical biogeography
massive extinction
reticulate evolution
single-copy nuclear genes
Synthesis of Nuclear and Chloroplast Data Combined With Network Analyses Supports the Polyploid Origin of the Apple Tribe and the Hybrid Origin of the Maleae-Gillenieae Clade
期刊论文
FRONTIERS IN PLANT SCIENCE, 2022, 卷号: 12
Authors:
Hodel, Richard G. J.
;
Zimmer, Elizabeth A.
;
Liu, Bin-Bin
;
Wen, Jun
Adobe PDF(3910Kb)
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Submit date:2024/03/07
allopolyploidy
ancient hybridization
cytonuclear conflict
genome doubling
phylogenetic networks
phylogenomics
reticulate evolution
Capturing single-copy nuclear genes, organellar genomes, and nuclear ribosomal DNA from deep genome skimming data for plant phylogenetics: A case study in Vitaceae
期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2021, 卷号: 59, 期号: 5, 页码: 1124-1138
Authors:
Liu, Bin-Bin
;
Ma, Zhi-Yao
;
Ren, Chen
;
Hodel, Richard G. J.
;
Sun, Miao
;
Liu, Xiu-Qun
;
Liu, Guang-Ning
;
Hong, De-Yuan
;
Zimmer, Elizabeth A.
;
Wen, Jun
Adobe PDF(2650Kb)
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View/Download:102/0
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Submit date:2023/02/24
deep genome skimming
Hyb-Seq
mitochondrial genes
nuclear ribosomal DNA
single-copy nuclear genes
Vitaceae