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A revised subfamilial classification of Polypodiaceae based on plastome, nuclear ribosomal, and morphological evidence 期刊论文
TAXON, 2022, 卷号: 71, 期号: 2, 页码: 288-306
作者:  Wei, Ran;  Zhang, Xian-Chun
Adobe PDF(2147Kb)  |  收藏  |  浏览/下载：12/0  |  提交时间：2024/03/07
genome skimming  nuclear ribosomal cistron  plastid genome  phylogenetic classification  polygrammoids  subfamily  
The associated evolution among the extensive RNA editing, GC-biased mutation, and PPR family expansion in the organelle genomes of Selaginellaceae 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2022
作者:  Kang, Jong-Soo;  Yu, Jigao;  Zhang, Xian-Chun;  Xiang, Qiao-Ping
Adobe PDF(1627Kb)  |  收藏  |  浏览/下载：10/0  |  提交时间：2024/03/07
GC-biased mutation  mitochondrial genome (mitogenome)  pentatricopeptide repeat (PPR) protein  plastid genome (plastome)  RNA editing  Selaginellaceae  
Integrative species delimitation of Selaginella labordei and closely related species: Uncovering the mysterious identity of S. jugorum and S. tibetica, and description of a new species 期刊论文
TAXON, 2022, 卷号: 71, 期号: 6, 页码: 1155-1169
作者:  Zhang, Meng-Hua;  Zhang, Xian-Chun
Adobe PDF(5218Kb)  |  收藏  |  浏览/下载：14/0  |  提交时间：2024/03/07
26S rDNA  new species  pgiC  plastid genome  Selaginella labordei group  species delimitation  
The evolution of extremely diverged plastomes in Selaginellaceae (lycophyte) is driven by repeat patterns and the underlying DNA maintenance machinery 期刊论文
PLANT JOURNAL, 2022, 卷号: 111, 期号: 3, 页码: 768-784
作者:  Xiang, Qiao-Ping;  Tang, Jun-Yong;  Yu, Ji-Gao;  Smith, David Roy;  Zhu, Yan-Mei;  Wang, Ya-Rong;  Kang, Jong-Soo;  Yang, Jie;  Zhang, Xian-Chun
Adobe PDF(1628Kb)  |  收藏  |  浏览/下载：15/0  |  提交时间：2024/03/07
Selaginella sinensis  network plastome  perfect repeats  dynamic mitogenome  GC content  RNA editing  
Plastid phylogenomic analyses of the Selaginella sanguinolenta group (Selaginellaceae) reveal conflict signatures resulting from sequence types, outlier genes, and pervasive RNA editing 期刊论文
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2022, 卷号: 173
作者:  Zhang, Meng-Hua;  Xiang, Qiao-Ping;  Zhang, Xian-Chun
Adobe PDF(5084Kb)  |  收藏  |  浏览/下载：13/0  |  提交时间：2024/03/07
Alternative topologies  Gene-tree conflict  Plastome  Phylogenetic signal  Selaginella sanguinolenta group  Species trees  
Plastid phylogenomics provides novel insights into the infrafamilial relationship of Polypodiaceae 期刊论文
CLADISTICS, 2021, 卷号: 37, 期号: 6, 页码: 717-727
作者:  Wei, Ran;  Yang, Jie;  He, Li-Juan;  Liu, Hong-Mei;  Hu, Jia-Yu;  Liang, Si-Qi;  Wei, Xue-Ping;  Zhao, Cun-Feng;  Zhang, Xian-Chun
Adobe PDF(476Kb)  |  收藏  |  浏览/下载：78/0  |  提交时间：2023/02/24
Plastome-based phylogenomics resolves the placement of the sanguinolenta group in the spikemoss of lycophyte (Selaginellaceae) 期刊论文
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2020, 卷号: 147
作者:  Zhang, Hong-Rui;  Wei, Ran;  Xiang, Qiao-Ping;  Zhang, Xian-Chun
Adobe PDF(1456Kb)  |  收藏  |  浏览/下载：95/0  |  提交时间：2022/03/01
GC content  Nucleotide substitution rate  Phylogeny  Plastome  Sanguinolenta group  
Distinctive evolutionary pattern of organelle genomes linked to the nuclear genome in Selaginellaceae 期刊论文
PLANT JOURNAL, 2020, 卷号: 104, 期号: 6, 页码: 1657-1672
作者:  Kang, Jong-Soo;  Zhang, Hong-Rui;  Wang, Ya-Rong;  Liang, Si-Qi;  Mao, Zhi-Yuan;  Zhang, Xian-Chun;  Xiang, Qiao-Ping
Adobe PDF(1546Kb)  |  收藏  |  浏览/下载：121/0  |  提交时间：2022/03/01
Selaginella  plastid genome  mitochondrial genome  genome evolution  convergent evolution  RecA  
Directed Repeats Co-occur with Few Short-Dispersed Repeats in Plastid Genome of a Spikemoss, Selaginella vardei (Selaginellaceae, Lycopodiopsida) 期刊论文
BMC GENOMICS, 2019, 卷号: 20
作者:  Zhang, Hong-Rui;  Zhang, Xian-Chun;  Xiang, Qiao-Ping
Adobe PDF(1747Kb)  |  收藏  |  浏览/下载：83/0  |  提交时间：2022/01/06
direct repeat  inversion  inverted repeat  plastome evolution  short dispersed repeats  
Directed Repeats Co-occur with Few Short-Dispersed Repeats in Plastid Genome of a Spikemoss, Selaginella vardei (Selaginellaceae, Lycopodiopsida) (vol 20, pg 484, 2019) 期刊论文
BMC GENOMICS, 2019, 卷号: 20
作者:  Zhang, Hong-Rui;  Zhang, Xian-Chun;  Xiang, Qiao-Ping
Adobe PDF(601Kb)  |  收藏  |  浏览/下载：92/0  |  提交时间：2022/01/06