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Stepwise selection of natural variations at CTB2 and CTB4a improves cold adaptation during domestication of japonica rice 期刊论文
NEW PHYTOLOGIST, 2021, 卷号: 231, 期号: 3, 页码: 1056-1072
Authors:  Li, Jilong;  Zeng, Yawen;  Pan, Yinghua;  Zhou, Lei;  Zhang, Zhanying;  Guo, Haifeng;  Lou, Qijin;  Shui, Guanghou;  Huang, Hanguang;  Tian, He;  Guo, Yongmei;  Yuan, Pingrong;  Yang, Hong;  Pan, Guojun;  Wang, Ruiying;  Zhang, Hongliang;  Yang, Shuhua;  Guo, Yan;  Ge, Song;  Li, Jinjie;  Li, Zichao
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cold adaptation  de novo mutation  rice  standing variation  stepwise selection  
The genome of a wild Medicago species provides insights into the tolerant mechanisms of legume forage to environmental stress 期刊论文
BMC BIOLOGY, 2021, 卷号: 19, 期号: 1
Authors:  Wang, Tianzuo;  Ren, Lifei;  Li, Caihong;  Zhang, Di;  Zhang, Xiuxiu;  Zhou, Gang;  Gao, Dan;  Chen, Rujin;  Chen, Yuhui;  Wang, Zhaolan;  Shi, Fengling;  Farmer, Andrew D.;  Li, Yansu;  Zhou, Mengyan;  Young, Nevin D.;  Zhang, Wen-Hao
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Wild genetic resource  Genome  Evolution  Domestication  Comparative genomics  Transcriptome  Single-nucleotide polymorphism  Drought tolerance  Medicago ruthenica  
Extensive variation within the pan-genome of cultivated and wild sorghum 期刊论文
NATURE PLANTS, 2021, 卷号: 7, 期号: 6, 页码: 766-773
Authors:  Tao, Yongfu;  Luo, Hong;  Xu, Jiabao;  Cruickshank, Alan;  Zhao, Xianrong;  Teng, Fei;  Hathorn, Adrian;  Wu, Xiaoyuan;  Liu, Yuanming;  Shatte, Tracey;  Jordan, David;  Jing, Haichun;  Mace, Emma
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The Physalis floridana genome provides insights into the biochemical and morphological evolution of Physalis fruits 期刊论文
HORTICULTURE RESEARCH, 2021, 卷号: 8, 期号: 1
Authors:  Lu, Jiangjie;  Luo, Meifang;  Wang, Li;  Li, Kunpeng;  Yu, Yongyi;  Yang, Weifei;  Gong, Pichang;  Gao, Huihui;  Li, Qiaoru;  Zhao, Jing;  Wu, Lanfeng;  Zhang, Mingshu;  Liu, Xueyang;  Zhang, Xuemei;  Zhang, Xian;  Kang, Jieyu;  Yu, Tongyuan;  Li, Zhimin;  Jiao, Yuannian;  Wang, Huizhong;  He, Chaoying
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Identification of long noncoding natural antisense transcripts (lncNATs) correlated with drought stress response in wild rice (Oryza nivara) 期刊论文
BMC GENOMICS, 2021, 卷号: 22, 期号: 1
Authors:  Xu, Yong-Chao;  Zhang, Jie;  Zhang, Dong-Yan;  Nan, Ying-Hui;  Ge, Song;  Guo, Ya-Long
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Drought stress  Long noncoding RNA  O  nivara  Strand-specific RNA-seq  Wild rice  
Transcriptomic and proteomic responses to brown plant hopper (Nilaparvata lugens) in cultivated and Bt-transgenic rice (Oryza sativa) and wild rice (O. rufipogon) 期刊论文
JOURNAL OF PROTEOMICS, 2021, 卷号: 232
Authors:  Liu, Yongbo;  Wang, Weiqing;  Li, Yonghua;  Liu, Fang;  Han, Weijuan;  Li, Junsheng
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Crop domestication  Crop wild species  Herbivory  Transgenic rice  Transcriptomic  Proteomic analysis  
Genetic and Geographic Patterns of Duplicate DPL Genes Causing Genetic Incompatibility Within Rice: Implications for Multiple Domestication Events in Rice 期刊论文
RICE SCIENCE, 2021, 卷号: 28, 期号: 1, 页码: 58-68
Authors:  Xu Xun;  Ge Song;  Zhang Fumin
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rice  DPL gene  domestication  genetic incompatibility  phylogeography  
Divergence in flowering time is a major component contributing to reproductive isolation between two wild rice species (Oryza rufipogon and O. nivara) 期刊论文
SCIENCE CHINA-LIFE SCIENCES, 2020, 卷号: 63, 期号: 11, 页码: 1714-1724
Authors:  Xu, Xun;  Meng, Qing-Lin;  Geng, Mu-Fan;  Ren, Ning-Ning;  Zhou, Lian;  Du, Yu-Su;  Cai, Zhe;  Wang, Mei-Xia;  Wang, Xin;  Wang, Xiu-Hua;  Han, Jing-Dan;  Jiang, Shuai;  Jing, Chun-Yan;  Liu, Rong;  Zheng, Xiao-Ming;  Yang, Qing-Wen;  Zhang, Fu-Min;  Ge, Song
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reproductive isolation  flowering time  speciation  adaptation  Oryza species  
Differentiation, evolution and utilization of natural alleles for cold adaptability at the reproductive stage in rice 期刊论文
PLANT BIOTECHNOLOGY JOURNAL, 2020, 卷号: 18, 期号: 12, 页码: 2491-2503
Authors:  Guo, Haifeng;  Zeng, Yawen;  Li, Jilong;  Ma, Xiaoqian;  Zhang, Zhanying;  Lou, Qijin;  Li, Jin;  Gu, Yunsong;  Zhang, Hongliang;  Li, Jinjie;  Li, Zichao
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adaptive differentiation  cold tolerance  GWAS  breeding  
The Chromosome-Based Rubber Tree Genome Provides New Insights into Spurge Genome Evolution and Rubber Biosynthesis 期刊论文
MOLECULAR PLANT, 2020, 卷号: 13, 期号: 2, 页码: 336-350
Authors:  Liu, Jin;  Shi, Cong;  Shi, Cheng-Cheng;  Li, Wei;  Zhang, Qun-Jie;  Zhang, Yun;  Li, Kui;  Lu, Hui-Fang;  Shi, Chao;  Zhu, Si-Tao;  Xiao, Zai-Yun;  Nan, Hong;  Yue, Yao;  Zhu, Xun-Ge;  Wu, Yu;  Hong, Xiao-Ning;  Fan, Guang-Yi;  Tong, Yan;  Zhang, Dan;  Mao, Chang-Li;  Liu, Yun-Long;  Hao, Shi-Jie;  Liu, Wei-Qing;  Lv, Mei-Qi;  Zhang, Hai-Bin;  Liu, Yuan;  Hu-tang, Ge-Ran;  Wang, Jin-Peng;  Wang, Jia-Hao;  Sun, Ying-Huai;  Ni, Shu-Bang;  Chen, Wen-Bin;  Zhang, Xing-Cai;  Jiao, Yuan-Nian;  Eichler, Evan E.;  Li, Guo-Hua;  Liu, Xin;  Gao, Li-Zhi
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rubber tree  rubber biosynthesis  chromosome evolution  whole-genome duplication  domestication