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Phylogenomic conflict analyses in the apple genus Malus s.l. reveal widespread hybridization and allopolyploidy driving diversification, with insights into the complex biogeographic history in the Northern Hemisphere 期刊论文
JOURNAL OF INTEGRATIVE PLANT BIOLOGY, 2022, 卷号: 64, 期号: 5, 页码: 1020-1043
作者:  Liu, Bin-Bin;  Ren, Chen;  Kwak, Myounghai;  Hodel, Richard G. J.;  Xu, Chao;  He, Jian;  Zhou, Wen-Bin;  Huang, Chien-Hsun;  Ma, Hong;  Qian, Guan-Ze;  Hong, De-Yuan;  Wen, Jun
Adobe PDF(3053Kb)  |  收藏  |  浏览/下载：18/0  |  提交时间：2024/03/07
deep genome skimming  genomic discordance  historical biogeography  massive extinction  reticulate evolution  single-copy nuclear genes  
Out of the Pan-Himalaya: Evolutionary history of the Paeoniaceae revealed by phylogenomics 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2021, 卷号: 59, 期号: 6, 页码: 1170-1182
作者:  Zhou, Shi-Liang;  Xu, Chao;  Liu, Jing;  Yu, Yan;  Wu, Ping;  Cheng, Tao;  Hong, De-Yuan
Adobe PDF(1288Kb)  |  收藏  |  浏览/下载：71/0  |  提交时间：2023/02/24
biogeography  molecular dating  Paeonia  phylogeny  reticulate evolution  
Gen-morph species concept-A new and integrative species concept for outbreeding organisms 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2020, 卷号: 58, 期号: 5, 页码: 725-742
作者:  Hong, De-Yuan
Adobe PDF(5144Kb)  |  收藏  |  浏览/下载：105/0  |  提交时间：2022/03/01
continuous or discontinuous variations  cross-compatible  gene flow  isolation  lineage  monophyly  outbreeding organism  PaeoniaL  statistics  
Phylogenetic relationships and chloroplast capture in the Amelanchier-Malacomeles-Peraphyllum clade (Maleae, Rosaceae): Evidence from chloroplast genome and nuclear ribosomal DNA data using genome skimming 期刊论文
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2020, 卷号: 147
作者:  Liu, Bin-Bin;  Campbell, Christopher S.;  Hong, De-Yuan;  Wen, Jun
Adobe PDF(2972Kb)  |  收藏  |  浏览/下载：101/0  |  提交时间：2022/03/01
Chloroplast capture  Hybridization  Maleae  Nuclear ribosomal DNA  Plastome  Rosaceae  
Eriobotrya Belongs to Rhaphiolepis (Maleae, Rosaceae): Evidence From Chloroplast Genome and Nuclear Ribosomal DNA Data 期刊论文
FRONTIERS IN PLANT SCIENCE, 2020, 卷号: 10
作者:  Liu, Bin-Bin;  Liu, Guang-Ning;  Hong, De-Yuan;  Wen, Jun
Adobe PDF(2906Kb)  |  收藏  |  浏览/下载：89/0  |  提交时间：2022/03/01
chloroplast genome  Eriobotrya  hybridization  Maleae  nrDNA  Rhaphiolepis  Rosaceae  
Phylogenomic analyses of the Photinia complex support the recognition of a new genus Phippsiomeles and the resurrection of a redefined Stranvaesia in Maleae (Rosaceae) 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2019, 卷号: 57, 期号: 6, 页码: 678-694
作者:  Liu, Bin-Bin;  Hong, De-Yuan;  Zhou, Shi-Liang;  Xu, Chao;  Dong, Wen-Pan;  Johnson, Gabriel;  Wen, Jun
Adobe PDF(1734Kb)  |  收藏  |  浏览/下载：109/0  |  提交时间：2022/01/06
genome skimming  hybridization  Maleae  nrDNA  Phippsiomeles  Rosaceae  Stranvaesia  
Resolving the systematic positions of enigmatic taxa: Manipulating the chloroplast genome data of Saxifragales 期刊论文
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2018, 卷号: 126, 页码: 321-330
作者:  Dong, Wenpan;  Xu, Chao;  Wu, Ping;  Cheng, Tao;  Yu, Jing;  Zhou, Shiliang;  Hong, De-Yuan
Adobe PDF(1378Kb)  |  收藏  |  浏览/下载：88/0  |  提交时间：2022/02/25
Analytical methodology  Paeoniaceae  Phylogenomics  Saxifragales  Systematics error  
Which family? - morphological and phylogenetic analyses of the enigmatic genus Numaeacampa (Campanulaceae) 期刊论文
KEW BULLETIN, 2017, 卷号: 72, 期号: 2
作者:  Wang, Qiang;  Xu, Chao;  Pan, Kai-Yu;  Hong, De-Yuan
Adobe PDF(3333Kb)  |  收藏  |  浏览/下载：84/0  |  提交时间：2022/03/28
Laos  Lycianthes  molecular phylogeny  morphology  Solanaceae  taxonomy.  
Taxonomic revision of the genus Pseudocodon (Campanulaceae) based on character analysis and molecular phylogeny 期刊论文
PHYTOTAXA, 2015, 卷号: 204, 期号: 1, 页码: 49-64
作者:  Wang, Qiang;  Hong, De-Yuan
Adobe PDF(1568Kb)  |  收藏  |  浏览/下载：58/0  |  提交时间：2022/09/13
morphology  multivariate statistical analyses  phylogenetics  population sampling  taxonomy  
A new taxonomic system of the Campanulaceae s.s. 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2015, 卷号: 53, 期号: 3, 页码: 203-209
作者:  Hong, De-Yuan;  Wang, Qiang
Adobe PDF(511Kb)  |  收藏  |  浏览/下载：76/2  |  提交时间：2022/09/13
Campanulaceae  Campanuleae  classification system  Cyanantheae  phylogenetic analysis  Wahlenbergieae