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The evolution of extremely diverged plastomes in Selaginellaceae (lycophyte) is driven by repeat patterns and the underlying DNA maintenance machinery 期刊论文
PLANT JOURNAL, 2022, 卷号: 111, 期号: 3, 页码: 768-784
作者:  Xiang, Qiao-Ping;  Tang, Jun-Yong;  Yu, Ji-Gao;  Smith, David Roy;  Zhu, Yan-Mei;  Wang, Ya-Rong;  Kang, Jong-Soo;  Yang, Jie;  Zhang, Xian-Chun
Adobe PDF(1628Kb)  |  收藏  |  浏览/下载：23/0  |  提交时间：2024/03/07
Selaginella sinensis  network plastome  perfect repeats  dynamic mitogenome  GC content  RNA editing  
Plastid phylogenomic analyses of the Selaginella sanguinolenta group (Selaginellaceae) reveal conflict signatures resulting from sequence types, outlier genes, and pervasive RNA editing 期刊论文
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2022, 卷号: 173
作者:  Zhang, Meng-Hua;  Xiang, Qiao-Ping;  Zhang, Xian-Chun
Adobe PDF(5084Kb)  |  收藏  |  浏览/下载：22/0  |  提交时间：2024/03/07
Alternative topologies  Gene-tree conflict  Plastome  Phylogenetic signal  Selaginella sanguinolenta group  Species trees  
Integrative taxonomy of the Selaginella helvetica group based on morphological, molecular and ecological data 期刊论文
TAXON, 2021, 卷号: 70, 期号: 6, 页码: 1163-1187
作者:  Zhang, Meng-Hua;  Wei, Ran;  Xiang, Qiao-Ping;  Ebihara, Atsushi;  Zhang, Xian-Chun
Adobe PDF(9820Kb)  |  收藏  |  浏览/下载：88/0  |  提交时间：2023/02/24
26S rDNA  pgiC  Selaginella  Selaginella helvetica group  species delimitation  
The origin of allotetraploid Lepisorus inaequibasis (Polypodiaceae) and paternal bias in its morphology and abiotic niche 期刊论文
TAXON, 2020, 卷号: 69, 期号: 1, 页码: 43-55
作者:  Zhao, Cun-Feng;  Wei, Ran;  Xiang, Qiao-Ping;  Zhang, Xian-Chun
Adobe PDF(7102Kb)  |  收藏  |  浏览/下载：117/0  |  提交时间：2022/03/01
hybrid origin  paternal preference  polyploid  reticulate evolution  
Phylogeny of Diplazium (Athyriaceae) revisited: Resolving the backbone relationships based on plastid genomes and phylogenetic tree space analysis 期刊论文
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2020, 卷号: 143
作者:  Wei, Ran;  Zhang, Xian-Chun
Adobe PDF(367Kb)  |  收藏  |  浏览/下载：116/0  |  提交时间：2022/03/01
Backbone  Diplazium  Evolutionary radiation  Plastome  Phylogenetic clustering  
Directed Repeats Co-occur with Few Short-Dispersed Repeats in Plastid Genome of a Spikemoss, Selaginella vardei (Selaginellaceae, Lycopodiopsida) 期刊论文
BMC GENOMICS, 2019, 卷号: 20
作者:  Zhang, Hong-Rui;  Zhang, Xian-Chun;  Xiang, Qiao-Ping
Adobe PDF(1747Kb)  |  收藏  |  浏览/下载：96/0  |  提交时间：2022/01/06
direct repeat  inversion  inverted repeat  plastome evolution  short dispersed repeats  
The Unique Evolutionary Trajectory and Dynamic Conformations of DR and IR/DR-Coexisting Plastomes of the Early Vascular Plant Selaginellaceae (Lycophyte) 期刊论文
GENOME BIOLOGY AND EVOLUTION, 2019, 卷号: 11, 期号: 4, 页码: 1258-1274
作者:  Zhang, Hong-Rui;  Xiang, Qiao-Ping;  Zhang, Xian-Chun
Adobe PDF(1212Kb)  |  收藏  |  浏览/下载：102/0  |  提交时间：2022/01/06
gene loss  homologous recombination  DR/IR evolution  Selaginella  substitution rate  time divergence  
The complete chloroplast genome sequence of a typical alpine fern Lepisorus waltonii (Ching) S. L. Yu in Polypodiaceae 期刊论文
MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 卷号: 4, 期号: 1, 页码: 801-803
作者:  Wang, Ya-Rong;  Zhao, Cun-Feng;  Yu, Xu-Dong;  Zhang, Xian-Chun
Adobe PDF(938Kb)  |  收藏  |  浏览/下载：100/0  |  提交时间：2022/01/06
Lepisorus waltonii  alpine fern  Polypodiaceae  chloroplast genome  
Hiya: A new genus segregated from Hypolepis in the fern family Dennstaedtiaceae, based on phylogenetic evidence and character evolution 期刊论文
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2018, 卷号: 127, 页码: 449-458
作者:  Shang, Hui;  Sundue, Michael;  Wei, Ran;  Wei, Xue-Ping;  Luo, Jun-Jie;  Liu, Li;  Schwartsburd, Pedro;  Yan, Yue-Hong;  Zhang, Xian-Chun
Adobe PDF(2915Kb)  |  收藏  |  浏览/下载：75/0  |  提交时间：2022/02/25
Hiya brooksiae  Hiya nigrescens  Hiya scabristipes  Morphology  Phylogeny  Systematics  
The complete chloroplast genome sequence of Huperzia javanica (sw.) C. Y. Yang in Lycopodiaceae 期刊论文
MITOCHONDRIAL DNA PART B-RESOURCES, 2017, 卷号: 2, 期号: 1, 页码: 216-218
作者:  Zhang, Hong-Rui;  Kang, Jong-Soo;  Viane, Ronald L. L.;  Zhang, Xian-Chun
Adobe PDF(1013Kb)  |  收藏  |  浏览/下载：85/0  |  提交时间：2022/03/28
Huperzia javanica  Huperzia  Lycopodiaceae  chloroplast genome