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Phylogenomic conflict analyses in the apple genus Malus s.l. reveal widespread hybridization and allopolyploidy driving diversification, with insights into the complex biogeographic history in the Northern Hemisphere 期刊论文
JOURNAL OF INTEGRATIVE PLANT BIOLOGY, 2022, 卷号: 64, 期号: 5, 页码: 1020-1043
作者:  Liu, Bin-Bin;  Ren, Chen;  Kwak, Myounghai;  Hodel, Richard G. J.;  Xu, Chao;  He, Jian;  Zhou, Wen-Bin;  Huang, Chien-Hsun;  Ma, Hong;  Qian, Guan-Ze;  Hong, De-Yuan;  Wen, Jun
Adobe PDF(3053Kb)  |  收藏  |  浏览/下载：15/0  |  提交时间：2024/03/07
deep genome skimming  genomic discordance  historical biogeography  massive extinction  reticulate evolution  single-copy nuclear genes  
Out of the Pan-Himalaya: Evolutionary history of the Paeoniaceae revealed by phylogenomics 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2021, 卷号: 59, 期号: 6, 页码: 1170-1182
作者:  Zhou, Shi-Liang;  Xu, Chao;  Liu, Jing;  Yu, Yan;  Wu, Ping;  Cheng, Tao;  Hong, De-Yuan
Adobe PDF(1288Kb)  |  收藏  |  浏览/下载：66/0  |  提交时间：2023/02/24
biogeography  molecular dating  Paeonia  phylogeny  reticulate evolution  
Chloroplast phylogenomics and divergence times of Lagerstroemia (Lythraceae) 期刊论文
BMC GENOMICS, 2021, 卷号: 22, 期号: 1
作者:  Dong, Wenpan;  Xu, Chao;  Liu, Yanlei;  Shi, Jipu;  Li, Wenying;  Suo, Zhili
Adobe PDF(1707Kb)  |  收藏  |  浏览/下载：66/0  |  提交时间：2023/02/24
Lagerstroemia  Chloroplast genome  Phylogeny  Divergence time  
Molecular phylogeny and species delimitation of Stachyuraceae: Advocating a herbarium specimen-based phylogenomic approach in resolving species boundaries 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2020, 卷号: 58, 期号: 5, 页码: 710-724
作者:  Su, Jun-Xia;  Dong, Cong-Cong;  Niu, Yan-Ting;  Lu, Li-Min;  Xu, Chao;  Liu, Bing;  Zhou, Shi-Liang;  Lu, An-Ming;  Zhu, Yu-Ping;  Wen, Jun;  Chen, Zhi-Duan
Adobe PDF(1772Kb)  |  收藏  |  浏览/下载：103/0  |  提交时间：2022/03/01
chloroplast genome  DNA reconstruction  phylogeny  specimen-based taxon sampling  Stachyuraceae  
Evolutionary directions of single nucleotide substitutions and structural mutations in the chloroplast genomes of the family Calycanthaceae 期刊论文
BMC EVOLUTIONARY BIOLOGY, 2020, 卷号: 20, 期号: 1
作者:  Dong, Wenpan;  Xu, Chao;  Wen, Jun;  Zhou, Shiliang
Adobe PDF(870Kb)  |  收藏  |  浏览/下载：94/0  |  提交时间：2022/03/01
Chloroplast genome  Calycanthaceae  Structural mutations  Substitution rate  Indels  
Phylogenomic analyses of the Photinia complex support the recognition of a new genus Phippsiomeles and the resurrection of a redefined Stranvaesia in Maleae (Rosaceae) 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2019, 卷号: 57, 期号: 6, 页码: 678-694
作者:  Liu, Bin-Bin;  Hong, De-Yuan;  Zhou, Shi-Liang;  Xu, Chao;  Dong, Wen-Pan;  Johnson, Gabriel;  Wen, Jun
Adobe PDF(1734Kb)  |  收藏  |  浏览/下载：104/0  |  提交时间：2022/01/06
genome skimming  hybridization  Maleae  nrDNA  Phippsiomeles  Rosaceae  Stranvaesia  
Resolving the systematic positions of enigmatic taxa: Manipulating the chloroplast genome data of Saxifragales 期刊论文
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2018, 卷号: 126, 页码: 321-330
作者:  Dong, Wenpan;  Xu, Chao;  Wu, Ping;  Cheng, Tao;  Yu, Jing;  Zhou, Shiliang;  Hong, De-Yuan
Adobe PDF(1378Kb)  |  收藏  |  浏览/下载：81/0  |  提交时间：2022/02/25
Analytical methodology  Paeoniaceae  Phylogenomics  Saxifragales  Systematics error  
Which family? - morphological and phylogenetic analyses of the enigmatic genus Numaeacampa (Campanulaceae) 期刊论文
KEW BULLETIN, 2017, 卷号: 72, 期号: 2
作者:  Wang, Qiang;  Xu, Chao;  Pan, Kai-Yu;  Hong, De-Yuan
Adobe PDF(3333Kb)  |  收藏  |  浏览/下载：81/0  |  提交时间：2022/03/28
Laos  Lycianthes  molecular phylogeny  morphology  Solanaceae  taxonomy.  
Phylogenetic Resolution in Juglans Based on Complete Chloroplast Genomes and Nuclear DNA Sequences 期刊论文
FRONTIERS IN PLANT SCIENCE, 2017, 卷号: 8
作者:  Dong, Wenpan;  Xu, Chao;  Li, Wenqing;  Xie, Xiaoman;  Lu, Yizeng;  Liu, Yanlei;  Jin, Xiaobai;  Suo, Zhili
Adobe PDF(1621Kb)  |  收藏  |  浏览/下载：77/0  |  提交时间：2022/03/28
Juglans  complete chloroplast genome  small inversion  internal transcribed spacer  ubiquitin ligase gene  phylogeny  
Comparative Analysis of Six Lagerstroemia Complete Chloroplast Genomes 期刊论文
FRONTIERS IN PLANT SCIENCE, 2017, 卷号: 8
作者:  Xu, Chao;  Dong, Wenpan;  Li, Wenqing;  Lu, Yizeng;  Xie, Xiaoman;  Jin, Xiaobai;  Shi, Jipu;  He, Kaihong;  Suo, Zhili
Adobe PDF(1817Kb)  |  收藏  |  浏览/下载：125/0  |  提交时间：2022/03/28
Lagerstroemia  chloroplast genome  comparative genomics  simple repeat sequence  sequence divergence  plastid marker  phylogeny