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Phylogenomic conflict analyses in the apple genus Malus s.l. reveal widespread hybridization and allopolyploidy driving diversification, with insights into the complex biogeographic history in the Northern Hemisphere 期刊论文
JOURNAL OF INTEGRATIVE PLANT BIOLOGY, 2022, 卷号: 64, 期号: 5, 页码: 1020-1043
作者:  Liu, Bin-Bin;  Ren, Chen;  Kwak, Myounghai;  Hodel, Richard G. J.;  Xu, Chao;  He, Jian;  Zhou, Wen-Bin;  Huang, Chien-Hsun;  Ma, Hong;  Qian, Guan-Ze;  Hong, De-Yuan;  Wen, Jun
Adobe PDF(3053Kb)  |  收藏  |  浏览/下载：15/0  |  提交时间：2024/03/07
deep genome skimming  genomic discordance  historical biogeography  massive extinction  reticulate evolution  single-copy nuclear genes  
Phylogeny, character evolution and taxonomic revision of Causonis, a segregate genus from Cayratia (Vitaceae) 期刊论文
TAXON, 2021, 卷号: 70, 期号: 6, 页码: 1188-1218
作者:  Parmar, Gaurav;  Viet-Cuong Dang;  Rabarijaona, Romer Narindra;  Chen, Zhi-Duan;  Jackes, Betsy R.;  Barrett, Russell L.;  Zhang, Zhu-Zhi;  Niu, Yan-Ting;  Trias-Blasi, Anna;  Wen, Jun;  Lu, Li-Min
Adobe PDF(14377Kb)  |  收藏  |  浏览/下载：78/0  |  提交时间：2023/02/24
Causonis  Cayratia  character evolution  phylogeny  seed morphology  taxonomic revision  Vitaceae  
An updated phylogenetic and biogeographic analysis based on genome skimming data reveals convergent evolution of shrubby habit in Clematis in the Pliocene and Pleistocene 期刊论文
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2021, 卷号: 164
作者:  He, Jian;  Lyu, Rudan;  Luo, Yike;  Lin, Lele;  Yao, Min;  Xiao, Jiamin;  Xie, Lei;  Wen, Jun;  Pei, Linying;  Yan, Shuangxi;  Cheng, Jin;  Li, Jinyu;  Li, Liangqian
Adobe PDF(9248Kb)  |  收藏  |  浏览/下载：83/0  |  提交时间：2023/02/24
Clematissect  Fruticella  Convergent evolution  Genome skimming  nrDNA  Plastid genome  Phylogeny  
Molecular phylogeny and species delimitation of Stachyuraceae: Advocating a herbarium specimen-based phylogenomic approach in resolving species boundaries 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2020, 卷号: 58, 期号: 5, 页码: 710-724
作者:  Su, Jun-Xia;  Dong, Cong-Cong;  Niu, Yan-Ting;  Lu, Li-Min;  Xu, Chao;  Liu, Bing;  Zhou, Shi-Liang;  Lu, An-Ming;  Zhu, Yu-Ping;  Wen, Jun;  Chen, Zhi-Duan
Adobe PDF(1772Kb)  |  收藏  |  浏览/下载：103/0  |  提交时间：2022/03/01
chloroplast genome  DNA reconstruction  phylogeny  specimen-based taxon sampling  Stachyuraceae  
Taxonomy and biogeography ofDiapensia(Diapensiaceae) based on chloroplast genome data 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2020, 卷号: 58, 期号: 5, 页码: 696-709
作者:  Ye, Jian-Fei;  Niu, Yan-Ting;  Feng, Yan-Lei;  Liu, Bing;  Hai, Li-Si;  Wen, Jun;  Chen, Zhi-Duan
Adobe PDF(5547Kb)  |  收藏  |  浏览/下载：94/0  |  提交时间：2022/03/01
biogeographic disjunction  chloroplast genome  Diapensia  Diapensiaceae  phylogeny  taxonomic treatment  
The complete chloroplast genome sequence of Magnolia mexicana DC. (Magnoliaceae) from Central America 期刊论文
MITOCHONDRIAL DNA PART B-RESOURCES, 2020, 卷号: 5, 期号: 1, 页码: 798-799
作者:  Liu, Guang-Ning;  Liu, Bin-Bin;  Wen, Jun;  Wang, Yu-Bing
Adobe PDF(967Kb)  |  收藏  |  浏览/下载：78/0  |  提交时间：2022/03/01
Chloroplast genome  Magnolia mexicana  Magnolia  Magnoliaceae  phylogeny  
Phylogeny and divergence time estimation of the walnut family (Juglandaceae) based on nuclear RAD-Seq and chloroplast genome data 期刊论文
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2020, 卷号: 147
作者:  Mu, Xian-Yun;  Tong, Ling;  Sun, Miao;  Zhu, Yi-Xuan;  Wen, Jun;  Lin, Qin-Wen;  Liu, Bing
Adobe PDF(1515Kb)  |  收藏  |  浏览/下载：92/0  |  提交时间：2022/03/01
Juglandaceae  RAD-Seq  Chloroplast genome  Divergence time  Phylogenetic incongruence  Juglans  
Phylogenetic relationships and chloroplast capture in the Amelanchier-Malacomeles-Peraphyllum clade (Maleae, Rosaceae): Evidence from chloroplast genome and nuclear ribosomal DNA data using genome skimming 期刊论文
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2020, 卷号: 147
作者:  Liu, Bin-Bin;  Campbell, Christopher S.;  Hong, De-Yuan;  Wen, Jun
Adobe PDF(2972Kb)  |  收藏  |  浏览/下载：93/0  |  提交时间：2022/03/01
Chloroplast capture  Hybridization  Maleae  Nuclear ribosomal DNA  Plastome  Rosaceae  
Evolutionary directions of single nucleotide substitutions and structural mutations in the chloroplast genomes of the family Calycanthaceae 期刊论文
BMC EVOLUTIONARY BIOLOGY, 2020, 卷号: 20, 期号: 1
作者:  Dong, Wenpan;  Xu, Chao;  Wen, Jun;  Zhou, Shiliang
Adobe PDF(870Kb)  |  收藏  |  浏览/下载：94/0  |  提交时间：2022/03/01
Chloroplast genome  Calycanthaceae  Structural mutations  Substitution rate  Indels  
Eriobotrya Belongs to Rhaphiolepis (Maleae, Rosaceae): Evidence From Chloroplast Genome and Nuclear Ribosomal DNA Data 期刊论文
FRONTIERS IN PLANT SCIENCE, 2020, 卷号: 10
作者:  Liu, Bin-Bin;  Liu, Guang-Ning;  Hong, De-Yuan;  Wen, Jun
Adobe PDF(2906Kb)  |  收藏  |  浏览/下载：84/0  |  提交时间：2022/03/01
chloroplast genome  Eriobotrya  hybridization  Maleae  nrDNA  Rhaphiolepis  Rosaceae