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A revised subfamilial classification of Polypodiaceae based on plastome, nuclear ribosomal, and morphological evidence 期刊论文
TAXON, 2022, 卷号: 71, 期号: 2, 页码: 288-306
Authors:  Wei, Ran;  Zhang, Xian-Chun
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genome skimming  nuclear ribosomal cistron  plastid genome  phylogenetic classification  polygrammoids  subfamily  
The extremely reduced, diverged and reconfigured plastomes of the largest mycoheterotrophic orchid lineage 期刊论文
BMC PLANT BIOLOGY, 2022, 卷号: 22, 期号: 1
Authors:  Wen, Yingying;  Qin, Ying;  Shao, Bingyi;  Li, Jianwu;  Ma, Chongbo;  Liu, Yan;  Yang, Boyun;  Jin, Xiaohua
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Gastrodieae  Didymoplexis  Plastomes  GC contents  ycf1  Substitution rates  
The CDC48 complex mediates ubiquitin-dependent degradation of intra-chloroplast proteins in plants 期刊论文
CELL REPORTS, 2022, 卷号: 39, 期号: 2
Authors:  Li, Jialong;  Yuan, Jiarui;  Li, Yuhong;  Sun, Huilun;  Ma, Tingting;  Huai, Junling;  Yang, Wenqiang;  Zhang, Wenhao;  Lin, Rongcheng
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The associated evolution among the extensive RNA editing, GC-biased mutation, and PPR family expansion in the organelle genomes of Selaginellaceae 期刊论文
Authors:  Kang, Jong-Soo;  Yu, Jigao;  Zhang, Xian-Chun;  Xiang, Qiao-Ping
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GC-biased mutation  mitochondrial genome (mitogenome)  pentatricopeptide repeat (PPR) protein  plastid genome (plastome)  RNA editing  Selaginellaceae  
Integrative species delimitation of Selaginella labordei and closely related species: Uncovering the mysterious identity of S. jugorum and S. tibetica, and description of a new species 期刊论文
TAXON, 2022, 卷号: 71, 期号: 6, 页码: 1155-1169
Authors:  Zhang, Meng-Hua;  Zhang, Xian-Chun
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26S rDNA  new species  pgiC  plastid genome  Selaginella labordei group  species delimitation  
The plastid-encoded protein Orf2971 is required for protein translocation and chloroplast quality control 期刊论文
PLANT CELL, 2022, 卷号: 34, 期号: 9, 页码: 3383-3399
Authors:  Xing, Jiale;  Pan, Junting;  Yi, Heng;  Lv, Kang;  Gan, Qiuliang;  Wang, Meimei;  Ge, Haitao;  Huang, Xiahe;  Huang, Fang;  Wang, Yingchun;  Rochaix, Jean-David;  Yang, Wenqiang
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Mitochondrial genes from 18 angiosperms fill sampling gaps for phylogenomic inferences of the early diversification of flowering plants 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2022, 卷号: 60, 期号: 4, 页码: 773-788
Authors:  Xue, Jia-Yu;  Dong, Shan-Shan;  Wang, Ming-Qiang;  Song, Tian-Qiang;  Zhou, Guang-Can;  Li, Zhen;  Van de Peer, Yves;  Shao, Zhu-Qing;  Wang, Wei;  Chen, Min;  Zhang, Yan-Mei;  Sun, Xiao-Qin;  Chen, Hong-Feng;  Zhang, Yong-Xia;  Zhang, Shou-Zhou;  Chen, Fei;  Zhang, Liang-Sheng;  Cox, Cymon;  Liu, Yang;  Wang, Qiang;  Hang, Yue-Yu
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early angiosperm radiation  incongruence  mitochondrial genome  phylogenomics  systematic error  
The evolution of extremely diverged plastomes in Selaginellaceae (lycophyte) is driven by repeat patterns and the underlying DNA maintenance machinery 期刊论文
PLANT JOURNAL, 2022, 卷号: 111, 期号: 3, 页码: 768-784
Authors:  Xiang, Qiao-Ping;  Tang, Jun-Yong;  Yu, Ji-Gao;  Smith, David Roy;  Zhu, Yan-Mei;  Wang, Ya-Rong;  Kang, Jong-Soo;  Yang, Jie;  Zhang, Xian-Chun
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Selaginella sinensis  network plastome  perfect repeats  dynamic mitogenome  GC content  RNA editing  
Phylogenomic conflict analyses in the apple genus Malus s.l. reveal widespread hybridization and allopolyploidy driving diversification, with insights into the complex biogeographic history in the Northern Hemisphere 期刊论文
JOURNAL OF INTEGRATIVE PLANT BIOLOGY, 2022, 卷号: 64, 期号: 5, 页码: 1020-1043
Authors:  Liu, Bin-Bin;  Ren, Chen;  Kwak, Myounghai;  Hodel, Richard G. J.;  Xu, Chao;  He, Jian;  Zhou, Wen-Bin;  Huang, Chien-Hsun;  Ma, Hong;  Qian, Guan-Ze;  Hong, De-Yuan;  Wen, Jun
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deep genome skimming  genomic discordance  historical biogeography  massive extinction  reticulate evolution  single-copy nuclear genes  
Plastid and nuclear phylogenomic incongruences and biogeographic implications of Magnolia s.l. (Magnoliaceae) 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2022, 卷号: 60, 期号: 1, 页码: 1-15
Authors:  Dong, Shan-Shan;  Wang, Ya-Ling;  Xia, Nian-He;  Liu, Yang;  Liu, Min;  Lian, Lian;  Li, Na;  Li, Ling-Fei;  Lang, Xiao-An;  Gong, Yi-Qing;  Chen, Lu;  Wu, Ernest;  Zhang, Shou-Zhou
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biogeography  hybridization  Magnoliaceae  phylogenomics  plastid