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Spatial phylogenetics of the Chinese angiosperm flora provides insights into endemism and conservation 期刊论文
JOURNAL OF INTEGRATIVE PLANT BIOLOGY, 2022, 卷号: 64, 期号: 1, 页码: 105-117
作者:  Zhang, Xiao-Xia;  Ye, Jian-Fei;  Laffan, Shawn W.;  Mishler, Brent D.;  Thornhill, Andrew H.;  Lu, Li-Min;  Mao, Ling-Feng;  Liu, Bing;  Chen, You-Hua;  Lu, An-Ming;  Miller, Joseph T.;  Chen, Zhi-Duan
Adobe PDF(2384Kb)  |  收藏  |  浏览/下载：11/0  |  提交时间：2024/03/07
categorical analysis of neo- and paleo-endemism  Chinese angiosperm flora  conservation priority  phylogenetic endemism  phylogenetic diversity  spatial phylogenetics  
A framework infrageneric classification of Carex (Cyperaceae) and its organizing principles 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2021, 卷号: 59, 期号: 4, 页码: 726-762
作者:  Roalson, Eric H.;  Jimenez-Mejias, Pedro;  Hipp, Andrew L.;  Benitez-Benitez, Carmen;  Bruederle, Leo P.;  Chung, Kyong-Sook;  Escudero, Marcial;  Ford, Bruce A.;  Ford, Kerry;  Gebauer, Sebastian;  Gehrke, Berit;  Hahn, Marlene;  Hayat, Muhammad Qasim;  Hoffmann, Mathias H.;  Jin, Xiao-Feng;  Kim, Sangtae;  Larridon, Isabel;  Leveille-Bourret, Etienne;  Lu, Yi-Fei;  Luceno, Modesto;  Maguilla, Enrique;  Marquez-Corro, Jose Ignacio;  Martin-Bravo, Santiago;  Masaki, Tomomi;  Miguez, Monica;  Naczi, Robert F. C.;  Reznicek, Anton A.;  Spalink, Daniel;  Starr, Julian R.;  Uzma;  Villaverde, Tamara;  Waterway, Marcia J.;  Wilson, Karen L.;  Zhang, Shu-Ren
Adobe PDF(1380Kb)  |  收藏  |  浏览/下载：82/0  |  提交时间：2023/02/24
Carex  clades  classification  sections  subgenera  
Paleo-polyploidization in Lycophytes 期刊论文
GENOMICS PROTEOMICS & BIOINFORMATICS, 2020, 卷号: 18, 期号: 3, 页码: 333-340
作者:  Wang, Jinpeng;  Yu, Jigao;  Sun, Pengchuan;  Li, Chao;  Song, Xiaoming;  Lei, Tianyu;  Li, Yuxian;  Yuan, Jiaqing;  Sun, Sangrong;  Ding, Hongling;  Duan, Xueqian;  Shen, Shaoqi;  Shen, Yanshuang;  Li, Jing;  Meng, Fanbo;  Xie, Yangqin;  Wang, Jianyu;  Hou, Yue;  Zhang, Jin;  Zhang, Xianchun;  Li, Xiu-Qing;  Paterson, Andrew H.;  Wang, Xiyin
Adobe PDF(2852Kb)  |  收藏  |  浏览/下载：112/0  |  提交时间：2022/03/01
Vascular plant  Lycophytes  Genome  Polyploidy  Evolution  
Deciphering the high-quality genome sequence of coriander that causes controversial feelings 期刊论文
PLANT BIOTECHNOLOGY JOURNAL, 2020, 卷号: 18, 期号: 6, 页码: 1444-1456
作者:  Song, Xiaoming;  Wang, Jinpeng;  Li, Nan;  Yu, Jigao;  Meng, Fanbo;  Wei, Chendan;  Liu, Chao;  Chen, Wei;  Nie, Fulei;  Zhang, Zhikang;  Gong, Ke;  Li, Xinyu;  Hu, Jingjing;  Yang, Qihang;  Li, Yuxian;  Li, Chunjin;  Feng, Shuyan;  Guo, He;  Yuan, Jiaqing;  Pei, Qiaoying;  Yu, Tong;  Kang, Xi;  Zhao, Wei;  Lei, Tianyu;  Sun, Pengchuan;  Wang, Li;  Ge, Weina;  Guo, Di;  Duan, Xueqian;  Shen, Shaoqi;  Cui, Chunlin;  Yu, Ying;  Xie, Yangqin;  Zhang, Jin;  Hou, Yue;  Wang, Jianyu;  Wang, Jinyu;  Li, Xiu-Qing;  Paterson, Andrew H.;  Wang, Xiyin
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De novo coriander genome  tetraploid  genome evolution  terpenoid biosynthesis pathway  RNA-Seq  metabolomics  
New Guinea has the world's richest island flora 期刊论文
NATURE, 2020, 卷号: 584, 期号: 7822, 页码: 579-583
作者:  Camara-Leret, Rodrigo;  Frodin, David G.;  Adema, Frits;  Anderson, Christiane;  Appelhans, Marc S.;  Argent, George;  Guerrero, Susana Arias;  Ashton, Peter;  Baker, William J.;  Barfod, Anders S.;  Barrington, David;  Borosova, Renata;  Bramley, Gemma L. C.;  Briggs, Marie;  Buerki, Sven;  Cahen, Daniel;  Callmander, Martin W.;  Cheek, Martin;  Chen, Cheng-Wei;  Conn, Barry J.;  Coode, Mark J. E.;  Darbyshire, Iain;  Dawson, Sally;  Dransfield, John;  Drinkell, Clare;  Duyfjes, Brigitta;  Ebihara, Atsushi;  Ezedin, Zacky;  Fu, Long-Fei;  Gideon, Osia;  Girmansyah, Deden;  Govaerts, Rafael;  Fortune-Hopkins, Helen;  Hassemer, Gustavo;  Hay, Alistair;  Heatubun, Charlie D.;  Hind, D. J. Nicholas;  Hoch, Peter;  Homot, Peter;  Hovenkamp, Peter;  Hughes, Mark;  Jebb, Matthew;  Jennings, Laura;  Jimbo, Tiberius;  Kessler, Michael;  Kiew, Ruth;  Knapp, Sandra;  Lamei, Penniel;  Lehnert, Marcus;  Lewis, Gwilym P.;  Linder, Hans Peter;  Lindsay, Stuart;  Low, Yee Wen;  Lucas, Eve;  Mancera, Jeffrey P.;  Monro, Alexandre K.;  Moore, Alison;  Middleton, David J.;  Nagamasu, Hidetoshi;  Newman, Mark F.;  Lughadha, Eimear Nic;  Melo, Pablo H. A.;  Ohlsen, Daniel J.;  Pannell, Caroline M.;  Parris, Barbara;  Pearce, Laura;  Penneys, Darin S.;  Perrie, Leon R.;  Petoe, Peter;  Poulsen, Axel Dalberg;  Prance, Ghillean T.;  Quakenbush, J. Peter;  Raes, Niels;  Rodda, Michele;  Rogers, Zachary S.;  Schuiteman, Andre;  Schwartsburd, Pedro;  Scotland, Robert W.;  Simmons, Mark P.;  Simpson, David A.;  Stevens, Peter;  Sundue, Michael;  Testo, Weston;  Trias-Blasi, Anna;  Turner, Ian;  Utteridge, Timothy;  Walsingham, Lesley;  Webber, Bruce L.;  Wei, Ran;  Weiblen, George D.;  Weigend, Maximilian;  Weston, Peter;  de Wilde, Willem;  Wilkie, Peter;  Wilmot-Dear, Christine M.;  Wilson, Hannah P.;  Wood, John R., I;  Zhang, Li-Bing;  van Welzen, Peter C.
Adobe PDF(7100Kb)  |  收藏  |  浏览/下载：139/0  |  提交时间：2022/03/01
Polyploidy Index and Its Implications for the Evolution of Polyploids 期刊论文
FRONTIERS IN GENETICS, 2019, 卷号: 10
作者:  Wang, Jinpeng;  Qin, Jun;  Sun, Pengchuan;  Ma, Xuelian;  Yu, Jigao;  Li, Yuxian;  Sun, Sangrong;  Lei, Tianyu;  Meng, Fanbo;  Wei, Chendan;  Liu, Xinyu;  Guo, He;  Liu, Xiaojian;  Xia, Ruiyan;  Li Wang;  Ge, Weina;  Song, Xiaoming;  Zhang, Lan;  Guo, Di;  Wang, Jinyu;  Baol, Shoutong;  Jiang, Shan;  Feng, Yishan;  Li, Xueping;  Paterson, Andrew H.;  Wang, Xiyin
Adobe PDF(3371Kb)  |  收藏  |  浏览/下载：99/0  |  提交时间：2022/01/06
polyploidy  angiosperm  P-index  genomics  bioinformatics  
The asparagus genome sheds light on the origin and evolution of a young Y chromosome 期刊论文
NATURE COMMUNICATIONS, 2017, 卷号: 8
作者:  Harkess, Alex;  Zhou, Jinsong;  Xu, Chunyan;  Bowers, John E.;  Van der Hulst, Ron;  Ayyampalayam, Saravanaraj;  Mercati, Francesco;  Riccardi, Paolo;  McKain, Michael R.;  Kakrana, Atul;  Tang, Haibao;  Ray, Jeremy;  Groenendijk, John;  Arikit, Siwaret;  Mathioni, Sandra M.;  Nakano, Mayumi;  Shan, Hongyan;  Telgmann-Rauber, Alexa;  Kanno, Akira;  Yue, Zhen;  Chen, Haixin;  Li, Wenqi;  Chen, Yanling;  Xu, Xiangyang;  Zhang, Yueping;  Luo, Shaochun;  Chen, Helong;  Gao, Jianming;  Mao, Zichao;  Pires, J. Chris;  Luo, Meizhong;  Kudrna, Dave;  Wing, Rod A.;  Meyers, Blake C.;  Yi, Kexian;  Kong, Hongzhi;  Lavrijsen, Pierre;  Sunseri, Francesco;  Falavigna, Agostino;  Ye, Yin;  Leebens-Mack, James H.;  Chen, Guangyu
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Megaphylogenetic Specimen-level Approaches to the Carex (Cyperaceae) Phylogeny Using ITS, ETS, and matK Sequences: Implications for Classification 期刊论文
SYSTEMATIC BOTANY, 2016, 卷号: 41, 期号: 3, 页码: 500-518
作者:  Jimenez-Mejias, Pedro;  Hahn, Marlene;  Lueders, Kate;  Starr, Julian R.;  Brown, Bethany H.;  Chouinard, Brianna N.;  Chung, Kyong-Sook;  Escudero, Marcial;  Ford, Bruce A.;  Ford, Kerry A.;  Gebauer, Sebastian;  Gehrke, Berit;  Hoffmann, Matthias H.;  Jin, Xiao-Feng;  Jung, Jongduk;  Kim, Sangtae;  Luceno, Modesto;  Maguilla, Enrique;  Martin-Bravo, Santiago;  Miguez, Monica;  Molina, Ana;  Naczi, Robert F. C.;  Pender, Jocelyn E.;  Reznicek, Anton A.;  Villaverde, Tamara;  Waterway, Marcia J.;  Wilson, Karen L.;  Yang, Jong-Cheol;  Zhang, Shuren;  Hipp, Andrew L.;  Roalson, Eric H.
Adobe PDF(2368Kb)  |  收藏  |  浏览/下载：95/0  |  提交时间：2022/07/08
Homoplasy  paraphyly  polyphyly  supermatrix  taxonomy  
Specimens at the Center: An Informatics Workflow and Toolkit for Specimen-level analysis of Public DNA database data 期刊论文
SYSTEMATIC BOTANY, 2016, 卷号: 41, 期号: 3, 页码: 529-539
作者:  Pham, Kasey K.;  Hahn, Marlene;  Lueders, Kate;  Brown, Bethany H.;  Bruederle, Leo P.;  Bruhl, Jeremy J.;  Chung, Kyong-Sook;  Derieg, Nathan J.;  Escudero, Marcial;  Ford, Bruce A.;  Gebauer, Sebastian;  Gehrke, Berit;  Hoffmann, Matthias H.;  Hoshino, Takuji;  Jimenez-Mejias, Pedro;  Jung, Jongduk;  Kim, Sangtae;  Luceno, Modesto;  Maguilla, Enrique;  Martin-Bravo, Santiago;  Naczi, Robert F. C.;  Reznicek, Anton A.;  Roalson, Eric H.;  Simpson, David A.;  Starr, Julian R.;  Villaverde, Tamara;  Waterway, Marcia J.;  Wilson, Karen L.;  Yano, Okihito;  Zhang, Shuren;  Hipp, Andrew L.
Adobe PDF(2470Kb)  |  收藏  |  浏览/下载：87/0  |  提交时间：2022/07/08
Carex  Cyperaceae  phylogenetic workflow  specimen-level data  supermatrix  taxon disparity index (TDI)  
A community-derived classification for extant lycophytes and ferns 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2016, 卷号: 54, 期号: 6, 页码: 563-603
作者:  Schuettpelz, Eric;  Schneider, Harald;  Smith, Alan R.;  Hovenkamp, Peter;  Prado, Jefferson;  Rouhan, Germinal;  Salino, Alexandre;  Sundue, Michael;  Almeida, Thais Elias;  Parris, Barbara;  Sessa, Emily B.;  Field, Ashley R.;  de Gasper, Andre Luis;  Rothfels, Carl J.;  Windham, Michael D.;  Lehnert, Marcus;  Dauphin, Benjamin;  Ebihara, Atsushi;  Lehtonen, Samuli;  Schwartsburd, Pedro Bond;  Metzgar, Jordan;  Zhang, Li-Bing;  Kuo, Li-Yaung;  Brownsey, Patrick J.;  Kato, Masahiro;  Arana, Marcelo Daniel;  Assis, Francine C.;  Barker, Michael S.;  Barrington, David S.;  Chang, Ho-Ming;  Chang, Yi-Han;  Chao, Yi-Shan;  Chen, Cheng-Wei;  Chen, De-Kui;  Chiou, Wen-Liang;  Dittrich, Vinicius Antonio de Oliveira;  Duan, Yi-Fan;  Dubuisson, Jean-Yves;  Farrar, Donald R.;  Fawcett, Susan;  Gabriel y Galan, Jose Maria;  Goes-Neto, Luiz Armando de Araujo;  Grant, Jason R.;  Grusz, Amanda L.;  Haufler, Christopher;  Hauk, Warren;  He, Hai;  Hennequin, Sabine;  Hirai, Regina Yoshie;  Huiet, Layne;  Kessler, Michael;  Korall, Petra;  Labiak, Paulo H.;  Larsson, Anders;  Leon, Blanca;  Li, Chun-Xiang;  Li, Fay-Wei;  Link-Perez, Melanie;  Liu, Hong-Mei;  Ngan Thi Lu;  Meza-Torres, Esteban I.;  Miao, Xin-Yuan;  Moran, Robbin;  Mynssen, Claudine Massi;  Nagalingum, Nathalie;  Ollgaard, Benjamin;  Paul, Alison M.;  Pereira, Jovani B. de S.;  Perrie, Leon R.;  Ponce, Monica;  Ranker, Tom A.;  Schulz, Christian;  Shinohara, Wataru;  Shmakov, Alexander;  Sigel, Erin M.;  de Souza, Filipe Soares;  Sylvestre, Lana da Silva;  Testo, Weston;  Triana-Moreno, Luz Amparo;  Tsutsumi, Chie;  Tuomisto, Hanna;  Valdespino, Ivan A.;  Vasco, Alejandra;  Viveros, Raquel Stauffer;  Weakley, Alan;  Wei, Ran;  Weststrand, Stina;  Wolf, Paul G.;  Yatskievych, George;  Xu, Xiao-Gang;  Yan, Yue-Hong;  Zhang, Liang;  Zhang, Xian-Chun;  Zhou, Xin-Mao
Adobe PDF(687Kb)  |  收藏  |  浏览/下载：390/0  |  提交时间：2022/07/08
classification  ferns  lycophytes  monophyly  phylogeny  pteridophytes