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Capturing single-copy nuclear genes, organellar genomes, and nuclear ribosomal DNA from deep genome skimming data for plant phylogenetics: A case study in Vitaceae 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2021, 卷号: 59, 期号: 5, 页码: 1124-1138
作者:  Liu, Bin-Bin;  Ma, Zhi-Yao;  Ren, Chen;  Hodel, Richard G. J.;  Sun, Miao;  Liu, Xiu-Qun;  Liu, Guang-Ning;  Hong, De-Yuan;  Zimmer, Elizabeth A.;  Wen, Jun
Adobe PDF(2650Kb)  |  收藏  |  浏览/下载：70/0  |  提交时间：2023/02/24
deep genome skimming  Hyb-Seq  mitochondrial genes  nuclear ribosomal DNA  single-copy nuclear genes  Vitaceae  
Noise does not equal bias in assessing the evolutionary history of the angiosperm flora of China: A response to Qian (2019) 期刊论文
JOURNAL OF BIOGEOGRAPHY, 2020, 卷号: 47, 期号: 10, 页码: 2286-2291
作者:  Lu, Li-Min;  Hu, Hai-Hua;  Peng, Dan-Xiao;  Liu, Bing;  Ye, Jian-Fei;  Yang, Tuo;  Li, Hong-Lei;  Sun, Miao;  Smith, Stephen A.;  Soltis, Pamela S.;  Soltis, Douglas E.;  Chen, Zhi-Duan
Adobe PDF(1107Kb)  |  收藏  |  浏览/下载：92/0  |  提交时间：2022/03/01
cradle  crown age of angiosperms  divergence time  evolutionary history  flora of China  fossils  museum  phylogeny  
Phylogeny and divergence time estimation of the walnut family (Juglandaceae) based on nuclear RAD-Seq and chloroplast genome data 期刊论文
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2020, 卷号: 147
作者:  Mu, Xian-Yun;  Tong, Ling;  Sun, Miao;  Zhu, Yi-Xuan;  Wen, Jun;  Lin, Qin-Wen;  Liu, Bing
Adobe PDF(1515Kb)  |  收藏  |  浏览/下载：94/0  |  提交时间：2022/03/01
Juglandaceae  RAD-Seq  Chloroplast genome  Divergence time  Phylogenetic incongruence  Juglans  
Evolutionary history of the angiosperm flora of China 期刊论文
NATURE, 2018, 卷号: 554, 期号: 7691, 页码: 234+
作者:  Lu, Li-Min;  Mao, Ling-Feng;  Yang, Tuo;  Ye, Jian-Fei;  Liu, Bing;  Li, Hong-Lei;  Sun, Miao;  Miller, Joseph T.;  Mathews, Sarah;  Hu, Hai-Hua;  Niu, Yan-Ting;  Peng, Dan-Xiao;  Chen, You-Hua;  Smith, Stephen A.;  Chen, Min;  Xiang, Kun-Li;  Le, Chi-Toan;  Dang, Viet-Cuong;  Lu, An-Ming;  Soltis, Pamela S.;  Soltis, Douglas E.;  Li, Jian-Hua;  Chen, Zhi-Duan
Adobe PDF(9486Kb)  |  收藏  |  浏览/下载：162/0  |  提交时间：2022/02/25
Differential expression of a WRKY gene between wild and cultivated soybeans correlates to seed size 期刊论文
JOURNAL OF EXPERIMENTAL BOTANY, 2017, 卷号: 68, 期号: 11, 页码: 2717-2729
作者:  Gu, Yongzhe;  Li, Wei;  Jiang, Hongwei;  Wang, Yan;  Gao, Huihui;  Liu, Miao;  Chen, Qingshan;  Lai, Yongcai;  He, Chaoying
Adobe PDF(2659Kb)  |  收藏  |  浏览/下载：91/0  |  提交时间：2022/03/28
CT-rich regulatory motif  domestication  expression variation  seed size  soybean  WRKY gene  
Tree of life for the genera of Chinese vascular plants 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2016, 卷号: 54, 期号: 4, 页码: 277-306
作者:  Chen, Zhi-Duan;  Yang, Tuo;  Lin, Li;  Lu, Li-Min;  Li, Hong-Lei;  Sun, Miao;  Liu, Bing;  Chen, Min;  Niu, Yan-Ting;  Ye, Jian-Fei;  Cao, Zhi-Yong;  Liu, Hong-Mei;  Wang, Xiao-Ming;  Wang, Wei;  Zhang, Jing-Bo;  Meng, Zhen;  Cao, Wei;  Li, Jian-Hui;  Wu, Sheng-Dan;  Zhao, Hui-Ling;  Liu, Zhong-Jian;  Du, Zhi-Yuan;  Wang, Qing-Feng;  Guo, Jing;  Tan, Xin-Xin;  Su, Jun-Xia;  Zhang, Lin-Jing;  Yang, Lei-Lei;  Liao, Yi-Ying;  Li, Ming-He;  Zhang, Guo-Qiang;  Chung, Shih-Wen;  Zhang, Jian;  Xiang, Kun-Li;  Li, Rui-Qi;  Soltis, Douglas E.;  Soltis, Pamela S.;  Zhou, Shi-Liang;  Ran, Jin-Hua;  Wang, Xiao-Quan;  Jin, Xiao-Hua;  Chen, You-Sheng;  Gao, Tian-Gang;  Li, Jian-Hua;  Zhang, Shou-Zhou;  Lu, An-Ming
Adobe PDF(2587Kb)  |  收藏  |  浏览/下载：108/0  |  提交时间：2022/07/08
China  DarwinTree  megaphylogeny  regional tree of life  SoTree  vascular plants  
A community-derived classification for extant lycophytes and ferns 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2016, 卷号: 54, 期号: 6, 页码: 563-603
作者:  Schuettpelz, Eric;  Schneider, Harald;  Smith, Alan R.;  Hovenkamp, Peter;  Prado, Jefferson;  Rouhan, Germinal;  Salino, Alexandre;  Sundue, Michael;  Almeida, Thais Elias;  Parris, Barbara;  Sessa, Emily B.;  Field, Ashley R.;  de Gasper, Andre Luis;  Rothfels, Carl J.;  Windham, Michael D.;  Lehnert, Marcus;  Dauphin, Benjamin;  Ebihara, Atsushi;  Lehtonen, Samuli;  Schwartsburd, Pedro Bond;  Metzgar, Jordan;  Zhang, Li-Bing;  Kuo, Li-Yaung;  Brownsey, Patrick J.;  Kato, Masahiro;  Arana, Marcelo Daniel;  Assis, Francine C.;  Barker, Michael S.;  Barrington, David S.;  Chang, Ho-Ming;  Chang, Yi-Han;  Chao, Yi-Shan;  Chen, Cheng-Wei;  Chen, De-Kui;  Chiou, Wen-Liang;  Dittrich, Vinicius Antonio de Oliveira;  Duan, Yi-Fan;  Dubuisson, Jean-Yves;  Farrar, Donald R.;  Fawcett, Susan;  Gabriel y Galan, Jose Maria;  Goes-Neto, Luiz Armando de Araujo;  Grant, Jason R.;  Grusz, Amanda L.;  Haufler, Christopher;  Hauk, Warren;  He, Hai;  Hennequin, Sabine;  Hirai, Regina Yoshie;  Huiet, Layne;  Kessler, Michael;  Korall, Petra;  Labiak, Paulo H.;  Larsson, Anders;  Leon, Blanca;  Li, Chun-Xiang;  Li, Fay-Wei;  Link-Perez, Melanie;  Liu, Hong-Mei;  Ngan Thi Lu;  Meza-Torres, Esteban I.;  Miao, Xin-Yuan;  Moran, Robbin;  Mynssen, Claudine Massi;  Nagalingum, Nathalie;  Ollgaard, Benjamin;  Paul, Alison M.;  Pereira, Jovani B. de S.;  Perrie, Leon R.;  Ponce, Monica;  Ranker, Tom A.;  Schulz, Christian;  Shinohara, Wataru;  Shmakov, Alexander;  Sigel, Erin M.;  de Souza, Filipe Soares;  Sylvestre, Lana da Silva;  Testo, Weston;  Triana-Moreno, Luz Amparo;  Tsutsumi, Chie;  Tuomisto, Hanna;  Valdespino, Ivan A.;  Vasco, Alejandra;  Viveros, Raquel Stauffer;  Weakley, Alan;  Wei, Ran;  Weststrand, Stina;  Wolf, Paul G.;  Yatskievych, George;  Xu, Xiao-Gang;  Yan, Yue-Hong;  Zhang, Liang;  Zhang, Xian-Chun;  Zhou, Xin-Mao
Adobe PDF(687Kb)  |  收藏  |  浏览/下载：394/0  |  提交时间：2022/07/08
classification  ferns  lycophytes  monophyly  phylogeny  pteridophytes