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RaacFold: a webserver for 3D visualization and analysis of protein structure by using reduced amino acid alphabets 期刊论文
NUCLEIC ACIDS RESEARCH, 2022, 卷号: 50, 期号: W1, 页码: W633-W638
作者:  Zheng, Lei;  Liu, Dongyang;  Li, Yuan Alex;  Yang, Siqi;  Liang, Yuchao;  Xing, Yongqiang;  Zuo, Yongchun
Adobe PDF(3481Kb)  |  收藏  |  浏览/下载：17/0  |  提交时间：2024/03/07
Excited-state intermediates in a designer protein encoding a phototrigger caught by an X-ray free-electron laser 期刊论文
NATURE CHEMISTRY, 2022, 卷号: 14, 期号: 9, 页码: 1054+
作者:  Liu, Xiaohong;  Liu, Pengcheng;  Li, Hongjie;  Xu, Zhen;  Jia, Lu;  Xia, Yan;  Yu, Minling;  Tang, Wenqin;  Zhu, Xiaolei;  Chen, Chao;  Zhang, Yuanlin;  Nango, Eriko;  Tanaka, Rie;  Luo, Fangjia;  Kato, Koji;  Nakajima, Yoshiki;  Kishi, Shunpei;  Yu, Huaxin;  Matsubara, Naoki;  Owada, Shigeki;  Tono, Kensuke;  Iwata, So;  Yu, Long-Jiang;  Shen, Jian-Ren;  Wang, Jiangyun
Adobe PDF(1994Kb)  |  收藏  |  浏览/下载：20/0  |  提交时间：2024/03/07
Identification and Fine Mapping of the Recessive Gene BK-5, Which Affects Cell Wall Biosynthesis and Plant Brittleness in Maize 期刊论文
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2022, 卷号: 23, 期号: 2
作者:  Li, Qigui;  Nie, Shujun;  Li, Gaoke;  Du, Jiyuan;  Ren, Ruchang;  Yang, Xiu;  Liu, Boyan;  Gao, Xiaolong;  Liu, Tianjian;  Zhang, Zhiming;  Zhao, Xiangyu;  Li, Xinzheng;  Nie, Yongxin;  Wang, Baichen;  Lin, Haijian;  Ding, Haiping;  Pan, Guangtang
Adobe PDF(4260Kb)  |  收藏  |  浏览/下载：31/0  |  提交时间：2024/03/07
maize  brittle stalk  cell wall  cellulose synthase catalytic subunit (CESA)  
Modular arrangements of sequence motifs determine the functional diversity of KDM proteins 期刊论文
BRIEFINGS IN BIOINFORMATICS, 2021, 卷号: 22, 期号: 3
作者:  Wang, Zerong;  Liu, Dongyang;  Xu, Baofang;  Tian, Ruixia;  Zuo, Yongchun
Adobe PDF(2363Kb)  |  收藏  |  浏览/下载：97/0  |  提交时间：2023/02/24
histone methylation  KDM proteins  arrangements of sequence motifs  modular activities  evolution  
Electrostatic charge controls the lowest LH1 Q(y) transition energy in the triply extremophilic purple phototrophic bacterium, Halorhodospira halochloris 期刊论文
BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS, 2021, 卷号: 1862, 期号: 11
作者:  Kimura, Yukihiro;  Nojima, Shingo;  Nakata, Kazuna;  Yamashita, Takuya;  Wang, Xiang-Ping;  Takenaka, Shinji;  Akimoto, Seiji;  Kobayashi, Masayuki;  Madigan, Michael T.;  Wang-Otomo, Zheng-Yu;  Yu, Long-Jiang
Adobe PDF(2479Kb)  |  收藏  |  浏览/下载：81/0  |  提交时间：2023/02/24
Bacteriochlorophyll b-containing light harvesting 1 reaction center  Halorhodospira halochloris  Interconvertible LH1 Q(y) shift  Purple photosynthetic bacteria  Triple extremophile  
RaacLogo: a new sequence logo generator by using reduced amino acid clusters 期刊论文
BRIEFINGS IN BIOINFORMATICS, 2021, 卷号: 22, 期号: 3
作者:  Zheng, Lei;  Liu, Dongyang;  Yang, Wuritu;  Yang, Lei;  Zuo, Yongchun
Adobe PDF(930Kb)  |  收藏  |  浏览/下载：81/0  |  提交时间：2023/02/24
sequence logo  reduced amino acid alphabets  protein design  web server  
Functional analysis of ZmCOP1 and ZmHY5 reveals conserved light signaling mechanism in maize and Arabidopsis 期刊论文
PHYSIOLOGIA PLANTARUM, 2020, 卷号: 169, 期号: 3, 页码: 369-379
作者:  Huai, Junling;  Jing, Yanjun;  Lin, Rongcheng
Adobe PDF(15391Kb)  |  收藏  |  浏览/下载：119/0  |  提交时间：2022/03/01
A comprehensive analysis of the lysine acetylome reveals diverse functions of acetylated proteins during de -etiolation in Zea mays 期刊论文
JOURNAL OF PLANT PHYSIOLOGY, 2020, 卷号: 248
作者:  Yan, Zhen;  Shen, Zhuo;  Gao, Zhi-Fang;  Chao, Qing;  Qian, Chun-Rong;  Zheng, Haiyan;  Wang, Bai-Chen
Adobe PDF(8093Kb)  |  收藏  |  浏览/下载：121/0  |  提交时间：2022/03/01
Lysine-acetylation  De-etiolation  Maize seedling  Photosynthesis establishment  
Properties and structure of a low-potential, penta-heme cytochrome c(552) from a thermophilic purple sulfur photosynthetic bacterium Thermochromatium tepidum 期刊论文
PHOTOSYNTHESIS RESEARCH, 2019, 卷号: 139, 期号: 1-3, 页码: 281-293
作者:  Chen, Jing-Hua;  Yu, Long-Jiang;  Boussac, Alain;  Wang-Otomo, Zheng-Yu;  Kuang, Tingyun;  Shen, Jian-Ren
Adobe PDF(4010Kb)  |  收藏  |  浏览/下载：156/0  |  提交时间：2022/01/06
Purple sulfur bacteria  Electron transfer  Cytochrome c  Multiheme  Crystal structure  Thermochromatium tepidum  
TRICHODERMA ASPEREULLM ACCC30536 INOCULATION DIFFERENTLY REGULATES THE TIME-COURSE EXPRESSION OF FIVE INDOLE-3-ACETIC ACID AMIDO SYNTHETASE GENES AND THE LEVELS OF IAA, SA AND JA IN POPULUS DAVIDIANA x P-ALBA VAR. PYRAMIDALIS 期刊论文
PAKISTAN JOURNAL OF BOTANY, 2019, 卷号: 51, 期号: 2, 页码: 689-697
作者:  Zhai, Tongtong;  Wang, Yuefeng;  Baloch, Abdul Majeed;  Baloch, Abdul Wahid;  Liu, Zhaoying;  Jiang, Chuanying;  Zhangr, Rongshu
Adobe PDF(2180Kb)  |  收藏  |  浏览/下载：123/0  |  提交时间：2022/01/06
Populus davidiana x P. alba var. pyramidalis  indole-3-acetic acid amido synthetase  RT-qPCR  Trichoderma aspereullm