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The associated evolution among the extensive RNA editing, GC-biased mutation, and PPR family expansion in the organelle genomes of Selaginellaceae 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2022
作者:  Kang, Jong-Soo;  Yu, Jigao;  Zhang, Xian-Chun;  Xiang, Qiao-Ping
Adobe PDF(1627Kb)  |  收藏  |  浏览/下载:14/0  |  提交时间:2024/03/07
GC-biased mutation  mitochondrial genome (mitogenome)  pentatricopeptide repeat (PPR) protein  plastid genome (plastome)  RNA editing  Selaginellaceae  
Rearrangement and domestication as drivers of Rosaceae mitogenome plasticity 期刊论文
BMC BIOLOGY, 2022, 卷号: 20, 期号: 1
作者:  Sun, Manyi;  Zhang, Mingyue;  Chen, Xuening;  Liu, Yueyuan;  Liu, Binbin;  Li, Jiaming;  Wang, Runze;  Zhao, Kejiao;  Wu, Jun
Adobe PDF(3866Kb)  |  收藏  |  浏览/下载:17/0  |  提交时间:2024/03/07
Mitogenome  Rosaceae  Rearrangement rate  Domestication  
Conversion between duplicated genes generated by polyploidization contributes to the divergence of poplar and willow 期刊论文
BMC PLANT BIOLOGY, 2022, 卷号: 22, 期号: 1
作者:  Wang, Jianyu;  Zhang, Lan;  Wang, Jiaqi;  Hao, Yanan;  Xiao, Qimeng;  Teng, Jia;  Shen, Shaoqi;  Zhang, Yan;  Feng, Yishan;  Bao, Shoutong;  Li, Yu;  Yan, Zimo;  Wei, Chendan;  Wang, Li;  Wang, Jinpeng
Adobe PDF(3305Kb)  |  收藏  |  浏览/下载:14/0  |  提交时间:2024/03/07
Poplar  Willow  Polyploidization  Duplicated genes  Gene conversion  
Plastid Phylogenomics and Plastomic Diversity of the Extant Lycophytes 期刊论文
GENES, 2022, 卷号: 13, 期号: 7
作者:  Chen, Sisi;  Wang, Ting;  Shu, Jiangping;  Xiang, Qiaoping;  Yang, Tuo;  Zhang, Xianchun;  Yan, Yuehong
Adobe PDF(13190Kb)  |  收藏  |  浏览/下载:14/0  |  提交时间:2024/03/07
lycophytes  plastid genome  comparative genomics  clubmoss  plastomic diversity  
A Collinearity-Incorporating Homology Inference Strategy for Connecting Emerging Assemblies in the Triticeae Tribe as a Pilot Practice in the Plant Pangenomic Era 期刊论文
MOLECULAR PLANT, 2020, 卷号: 13, 期号: 12, 页码: 1694-1708
作者:  Chen, Yongming;  Song, Wanjun;  Xie, Xiaoming;  Wang, Zihao;  Guan, Panfeng;  Peng, Huiru;  Jiao, Yuannian;  Ni, Zhongfu;  Sun, Qixin;  Guo, Weilong
Adobe PDF(2673Kb)  |  收藏  |  浏览/下载:112/0  |  提交时间:2022/03/01
homology inference  collinearity  database  pangenome  Triticeae tribe  polyploid  
Effects of Substrate-Binding Site Residues on the Biochemical Properties of a Tau Class Glutathione S-Transferase from Oryza sativa 期刊论文
GENES, 2020, 卷号: 11, 期号: 1
作者:  Yang, Xue;  Wei, Jinchi;  Wu, Zhihai;  Gao, Jie
Adobe PDF(2431Kb)  |  收藏  |  浏览/下载:97/0  |  提交时间:2022/03/01
glutathione S-transferase  glutathione-binding site  hydrophobic substrate-binding site  site-directed mutagenesis  enzymatic properties  
Evolutionary directions of single nucleotide substitutions and structural mutations in the chloroplast genomes of the family Calycanthaceae 期刊论文
BMC EVOLUTIONARY BIOLOGY, 2020, 卷号: 20, 期号: 1
作者:  Dong, Wenpan;  Xu, Chao;  Wen, Jun;  Zhou, Shiliang
Adobe PDF(870Kb)  |  收藏  |  浏览/下载:102/0  |  提交时间:2022/03/01
Chloroplast genome  Calycanthaceae  Structural mutations  Substitution rate  Indels  
Structural variation of the complete chloroplast genome and plastid phylogenomics of the genus Asteropyrum (Ranunculaceae) 期刊论文
SCIENTIFIC REPORTS, 2019, 卷号: 9
作者:  He, Jian;  Yao, Min;  Lyu, Ru-Dan;  Lin, Le-Le;  Liu, Hui-Jie;  Pei, Lin-Ying;  Yan, Shuang-Xi;  Xie, Lei;  Cheng, Jin
Adobe PDF(7147Kb)  |  收藏  |  浏览/下载:102/0  |  提交时间:2022/01/06
Functional and structural profiles of GST gene family from three Populus species reveal the sequence-function decoupling of orthologous genes 期刊论文
NEW PHYTOLOGIST, 2019, 卷号: 221, 期号: 2, 页码: 1060-1073
作者:  Yang, Qi;  Han, Xue-Min;  Gu, Jin-Ke;  Liu, Yan-Jing;  Yang, Mao-Jun;  Zeng, Qing-Yin
Adobe PDF(2710Kb)  |  收藏  |  浏览/下载:130/0  |  提交时间:2022/01/06
functional divergence  glutathione S-transferase (GST)  orthologous gene  Populus  protein function  
The impact and origin of copy number variations in the Oryza species 期刊论文
BMC GENOMICS, 2016, 卷号: 17
作者:  Bai, Zetao;  Chen, Jinfeng;  Liao, Yi;  Wang, Meijiao;  Liu, Rong;  Ge, Song;  Wing, Rod A.;  Chen, Mingsheng
Adobe PDF(2514Kb)  |  收藏  |  浏览/下载:104/0  |  提交时间:2022/07/08
Oryza species  Copy number variation (CNV)  NGS-based survey  CNV genes  Mutation mechanisms