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A chromosome-scale genome and transcriptomic analysis of the endangered tropical tree Vatica mangachapoi (Dipterocarpaceae) 期刊论文
DNA RESEARCH, 2022, 卷号: 29, 期号: 2
作者:  Tang, Liang;  Liao, Xuezhu;  Tembrock, Luke R.;  Ge, Song;  Wu, Zhiqiang
Adobe PDF(910Kb)  |  收藏  |  浏览/下载：11/0  |  提交时间：2024/03/07
dipterocarp forests  genome assembly  whole-genome duplication  tree genomics  conservation biology  
Improved pea reference genome and pan-genome highlight genomic features and evolutionary characteristics 期刊论文
NATURE GENETICS, 2022, 卷号: 54, 期号: 10, 页码: 1553+
作者:  Yang, Tao;  Liu, Rong;  Luo, Yingfeng;  Hu, Songnian;  Wang, Dong;  Wang, Chenyu;  Pandey, Manish K.;  Ge, Song;  Xu, Quanle;  Li, Nana;  Li, Guan;  Huang, Yuning;  Saxena, Rachit K.;  Ji, Yishan;  Li, Mengwei;  Yan, Xin;  He, Yuhua;  Liu, Yujiao;  Wang, Xuejun;  Xiang, Chao;  Varshney, Rajeev K.;  Ding, Hanfeng;  Gao, Shenghan;  Zong, Xuxiao
Adobe PDF(5518Kb)  |  收藏  |  浏览/下载：14/0  |  提交时间：2024/03/07
Identification of long noncoding natural antisense transcripts (lncNATs) correlated with drought stress response in wild rice (Oryza nivara) 期刊论文
BMC GENOMICS, 2021, 卷号: 22, 期号: 1
作者:  Xu, Yong-Chao;  Zhang, Jie;  Zhang, Dong-Yan;  Nan, Ying-Hui;  Ge, Song;  Guo, Ya-Long
Adobe PDF(3950Kb)  |  收藏  |  浏览/下载：74/0  |  提交时间：2023/02/24
Drought stress  Long noncoding RNA  O  nivara  Strand-specific RNA-seq  Wild rice  
Evolution of genes and genomes in the genomics era 期刊论文
SCIENCE CHINA-LIFE SCIENCES, 2020, 卷号: 63, 期号: 4, 页码: 602-605
作者:  Ge, Song;  Guo, Ya-Long
Adobe PDF(208Kb)  |  收藏  |  浏览/下载：90/0  |  提交时间：2022/03/01
The Tetracentron genome provides insight into the early evolution of eudicots and the formation of vessel elements 期刊论文
GENOME BIOLOGY, 2020, 卷号: 21, 期号: 1
作者:  Liu, Ping-Li;  Zhang, Xi;  Mao, Jian-Feng;  Hong, Yan-Ming;  Zhang, Ren-Gang;  Yilan, E.;  Nie, Shuai;  Jia, Kaihua;  Jiang, Chen-Kun;  He, Jian;  Shen, Weiwei;  He, Qizouhong;  Zheng, Wenqing;  Abbas, Samar;  Jewaria, Pawan Kumar;  Tian, Xuechan;  Liu, Chang-jun;  Jiang, Xiaomei;  Yin, Yafang;  Liu, Bo;  Wang, Li;  Jin, Biao;  Ma, Yongpeng;  Qiu, Zongbo;  Baluska, Frantisek;  Samaj, Jozef;  He, Xinqiang;  Niu, Shihui;  Xie, Jianbo;  Xie, Lei;  Xu, Huimin;  Kong, Hongzhi;  Ge, Song;  Dixon, Richard A.;  Jiao, Yuannian;  Lin, Jinxing
Adobe PDF(3373Kb)  |  收藏  |  浏览/下载：119/1  |  提交时间：2022/03/01
Tetracentron sinense  Vessel  Phylogenomic  Whole genome duplication  VND7  Resequencing  Genetic diversity  
Resequencing 545 ginkgo genomes across the world reveals the evolutionary history of the living fossil 期刊论文
NATURE COMMUNICATIONS, 2019, 卷号: 10
作者:  Zhao, Yun-Peng;  Fan, Guangyi;  Yin, Ping-Ping;  Sun, Shuai;  Li, Ning;  Hong, Xiaoning;  Hu, Gang;  Zhang, He;  Zhang, Fu-Min;  Han, Jing-Dan;  Hao, Ya-Jun;  Xu, Qiwu;  Yang, Xianwei;  Xia, Wenjie;  Chen, Wenbin;  Lin, Han-Yang;  Zhang, Rui;  Chen, Jiang;  Zheng, Xiao-Ming;  Lee, Simon Ming-Yuen;  Lee, Joongku;  Uehara, Koichi;  Wang, Jian;  Yang, Huanming;  Fu, Cheng-Xin;  Liu, Xin;  Xu, Xun;  Ge, Song
Adobe PDF(2992Kb)  |  收藏  |  浏览/下载：128/0  |  提交时间：2022/01/06
Parallel Speciation of Wild Rice Associated with Habitat Shifts 期刊论文
MOLECULAR BIOLOGY AND EVOLUTION, 2019, 卷号: 36, 期号: 5, 页码: 875-889
作者:  Cai, Zhe;  Zhou, Lian;  Ren, Ning-Ning;  Xu, Xun;  Liu, Rong;  Huang, Lei;  Zheng, Xiao-Ming;  Meng, Qing-Lin;  Du, Yu-Su;  Wang, Mei-Xia;  Geng, Mu-Fan;  Chen, Wen-Li;  Jing, Chun-Yan;  Zou, Xin-Hui;  Guo, Jie;  Chen, Cheng-Bin;  Zeng, Hua-Zhong;  Liang, Yun-Tao;  Wei, Xing-Hua;  Guo, Ya-Long;  Zhou, Hai-Fei;  Zhang, Fu-Min;  Ge, Song
Adobe PDF(887Kb)  |  收藏  |  浏览/下载：2666/0  |  提交时间：2022/01/06
parallel speciation  reproductive isolation  adaptation  divergent selection  wild rice  
The impact and origin of copy number variations in the Oryza species 期刊论文
BMC GENOMICS, 2016, 卷号: 17
作者:  Bai, Zetao;  Chen, Jinfeng;  Liao, Yi;  Wang, Meijiao;  Liu, Rong;  Ge, Song;  Wing, Rod A.;  Chen, Mingsheng
Adobe PDF(2514Kb)  |  收藏  |  浏览/下载：98/0  |  提交时间：2022/07/08
Oryza species  Copy number variation (CNV)  NGS-based survey  CNV genes  Mutation mechanisms  
Draft genome of the living fossil Ginkgo biloba 期刊论文
GIGASCIENCE, 2016, 卷号: 5
作者:  Guan, Rui;  Zhao, Yunpeng;  Zhang, He;  Fan, Guangyi;  Liu, Xin;  Zhou, Wenbin;  Shi, Chengcheng;  Wang, Jiahao;  Liu, Weiqing;  Liang, Xinming;  Fu, Yuanyuan;  Ma, Kailong;  Zhao, Lijun;  Zhang, Fumin;  Lu, Zuhong;  Lee, Simon Ming-Yuen;  Xu, Xun;  Wang, Jian;  Yang, Huanming;  Fu, Chengxin;  Ge, Song;  Chen, Wenbin
Adobe PDF(1060Kb)  |  收藏  |  浏览/下载：108/0  |  提交时间：2022/07/08
Ginkgo genome  Evolution of LTR-RTs  Tandem gene duplication  Plant defense mechanism  Gymnosperm evolution  Whole genome duplication  
A host plant genome (Zizania latifolia) after a century-long endophyte infection 期刊论文
PLANT JOURNAL, 2015, 卷号: 83, 期号: 4, 页码: 600-609
作者:  Guo, Longbiao;  Qiu, Jie;  Han, Zujing;  Ye, Zihong;  Chen, Chao;  Liu, Chuanjun;  Xin, Xiufang;  Ye, Chu-Yu;  Wang, Ying-Ying;  Xie, Hongqing;  Wang, Yu;  Bao, Jiandong;  Tang, She;  Xu, Jie;  Gui, Yijie;  Fu, Fei;  Wang, Weidi;  Zhang, Xingchen;  Zhu, Qianhua;  Guang, Xuanmin;  Wang, Chongzhi;  Cui, Haifeng;  Cai, Daguang;  Ge, Song;  Tuskan, Gerald A.;  Yang, Xiaohan;  Qian, Qian;  He, Sheng Yang;  Wang, Jun;  Zhou, Xue-Ping;  Fan, Longjiang
Adobe PDF(1121Kb)  |  收藏  |  浏览/下载：92/0  |  提交时间：2022/09/13
host-microbe interaction  genome  resistance gene analogs  Zizania  Jiaobai