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Stepwise selection of natural variations at CTB2 and CTB4a improves cold adaptation during domestication of japonica rice 期刊论文
NEW PHYTOLOGIST, 2021, 卷号: 231, 期号: 3, 页码: 1056-1072
作者:  Li, Jilong;  Zeng, Yawen;  Pan, Yinghua;  Zhou, Lei;  Zhang, Zhanying;  Guo, Haifeng;  Lou, Qijin;  Shui, Guanghou;  Huang, Hanguang;  Tian, He;  Guo, Yongmei;  Yuan, Pingrong;  Yang, Hong;  Pan, Guojun;  Wang, Ruiying;  Zhang, Hongliang;  Yang, Shuhua;  Guo, Yan;  Ge, Song;  Li, Jinjie;  Li, Zichao
Adobe PDF(2933Kb)  |  收藏  |  浏览/下载：76/0  |  提交时间：2023/02/24
cold adaptation  de novo mutation  rice  standing variation  stepwise selection  
Identification of long noncoding natural antisense transcripts (lncNATs) correlated with drought stress response in wild rice (Oryza nivara) 期刊论文
BMC GENOMICS, 2021, 卷号: 22, 期号: 1
作者:  Xu, Yong-Chao;  Zhang, Jie;  Zhang, Dong-Yan;  Nan, Ying-Hui;  Ge, Song;  Guo, Ya-Long
Adobe PDF(3950Kb)  |  收藏  |  浏览/下载：72/0  |  提交时间：2023/02/24
Drought stress  Long noncoding RNA  O  nivara  Strand-specific RNA-seq  Wild rice  
Genome-wide investigation on transcriptional responses to drought stress in wild and cultivated rice 期刊论文
ENVIRONMENTAL AND EXPERIMENTAL BOTANY, 2021, 卷号: 189
作者:  Geng, Mu-Fan;  Wang, Xiu-Hua;  Wang, Mei-Xia;  Cai, Zhe;  Meng, Qing-Lin;  Wang, Xin;  Zhou, Lian;  Han, Jing-Dan;  Li, Ji-Long;  Zhang, Fu-Min;  Guo, Ya-Long;  Ge, Song
Adobe PDF(3006Kb)  |  收藏  |  浏览/下载：80/0  |  提交时间：2023/02/24
Drought stress  RNA-seq  WGCNA  Genomic hotspot  Cultivated and wild rice  
Divergence in flowering time is a major component contributing to reproductive isolation between two wild rice species (Oryza rufipogon and O. nivara) 期刊论文
SCIENCE CHINA-LIFE SCIENCES, 2020, 卷号: 63, 期号: 11, 页码: 1714-1724
作者:  Xu, Xun;  Meng, Qing-Lin;  Geng, Mu-Fan;  Ren, Ning-Ning;  Zhou, Lian;  Du, Yu-Su;  Cai, Zhe;  Wang, Mei-Xia;  Wang, Xin;  Wang, Xiu-Hua;  Han, Jing-Dan;  Jiang, Shuai;  Jing, Chun-Yan;  Liu, Rong;  Zheng, Xiao-Ming;  Yang, Qing-Wen;  Zhang, Fu-Min;  Ge, Song
Adobe PDF(899Kb)  |  收藏  |  浏览/下载：120/0  |  提交时间：2022/03/01
reproductive isolation  flowering time  speciation  adaptation  Oryza species  
Evolution of genes and genomes in the genomics era 期刊论文
SCIENCE CHINA-LIFE SCIENCES, 2020, 卷号: 63, 期号: 4, 页码: 602-605
作者:  Ge, Song;  Guo, Ya-Long
Adobe PDF(208Kb)  |  收藏  |  浏览/下载：87/0  |  提交时间：2022/03/01
Transposable elements drive rapid phenotypic variation in Capsella rubella 期刊论文
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2019, 卷号: 116, 期号: 14, 页码: 6908-6913
作者:  Niu, Xiao-Min;  Xu, Yong-Chao;  Li, Zi-Wen;  Bian, Yu-Tao;  Hou, Xing-Hui;  Chen, Jia-Fu;  Zou, Yu-Pan;  Jiang, Juan;  Wu, Qiong;  Ge, Song;  Balasubramanian, Sureshkumar;  Guo, Ya-Long
Adobe PDF(1322Kb)  |  收藏  |  浏览/下载：146/0  |  提交时间：2022/01/06
Brassicaceae  Capsella rubella  natural variation  rapid phenotypic variation  transposable elements  
Resequencing 545 ginkgo genomes across the world reveals the evolutionary history of the living fossil 期刊论文
NATURE COMMUNICATIONS, 2019, 卷号: 10
作者:  Zhao, Yun-Peng;  Fan, Guangyi;  Yin, Ping-Ping;  Sun, Shuai;  Li, Ning;  Hong, Xiaoning;  Hu, Gang;  Zhang, He;  Zhang, Fu-Min;  Han, Jing-Dan;  Hao, Ya-Jun;  Xu, Qiwu;  Yang, Xianwei;  Xia, Wenjie;  Chen, Wenbin;  Lin, Han-Yang;  Zhang, Rui;  Chen, Jiang;  Zheng, Xiao-Ming;  Lee, Simon Ming-Yuen;  Lee, Joongku;  Uehara, Koichi;  Wang, Jian;  Yang, Huanming;  Fu, Cheng-Xin;  Liu, Xin;  Xu, Xun;  Ge, Song
Adobe PDF(2992Kb)  |  收藏  |  浏览/下载：124/0  |  提交时间：2022/01/06
Parallel Speciation of Wild Rice Associated with Habitat Shifts 期刊论文
MOLECULAR BIOLOGY AND EVOLUTION, 2019, 卷号: 36, 期号: 5, 页码: 875-889
作者:  Cai, Zhe;  Zhou, Lian;  Ren, Ning-Ning;  Xu, Xun;  Liu, Rong;  Huang, Lei;  Zheng, Xiao-Ming;  Meng, Qing-Lin;  Du, Yu-Su;  Wang, Mei-Xia;  Geng, Mu-Fan;  Chen, Wen-Li;  Jing, Chun-Yan;  Zou, Xin-Hui;  Guo, Jie;  Chen, Cheng-Bin;  Zeng, Hua-Zhong;  Liang, Yun-Tao;  Wei, Xing-Hua;  Guo, Ya-Long;  Zhou, Hai-Fei;  Zhang, Fu-Min;  Ge, Song
Adobe PDF(887Kb)  |  收藏  |  浏览/下载：2622/0  |  提交时间：2022/01/06
parallel speciation  reproductive isolation  adaptation  divergent selection  wild rice  
Population genetics and evolutionary history of the wild rice species Oryza rufipogon and O-nivara in Sri Lanka 期刊论文
ECOLOGY AND EVOLUTION, 2018, 卷号: 8, 期号: 23, 页码: 12056-12065
作者:  Sandamal, Salinda;  Tennakoon, Asanka;  Meng, Qing-Lin;  Marambe, Buddhi;  Ratnasekera, Disna;  Melo, Arthur;  Ge, Song
Adobe PDF(1252Kb)  |  收藏  |  浏览/下载：81/0  |  提交时间：2022/02/25
evolutionary history  O. nivara  O. rufipogon  population genetics  Sri Lanka  
Genomic variation associated with local adaptation of weedy rice during de-domestication 期刊论文
NATURE COMMUNICATIONS, 2017, 卷号: 8
作者:  Qiu, Jie;  Zhou, Yongjun;  Mao, Lingfeng;  Ye, Chuyu;  Wang, Weidi;  Zhang, Jianping;  Yu, Yongyi;  Fu, Fei;  Wang, Yunfei;  Qian, Feijian;  Qi, Ting;  Wu, Sanling;  Sultana, Most Humaira;  Cao, Ya-Nan;  Wang, Yu;  Timko, Michael P.;  Ge, Song;  Fan, Longjiang;  Lu, Yongliang
Adobe PDF(551Kb)  |  收藏  |  浏览/下载：110/0  |  提交时间：2022/03/28