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The associated evolution among the extensive RNA editing, GC-biased mutation, and PPR family expansion in the organelle genomes of Selaginellaceae 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2022
Authors:  Kang, Jong-Soo;  Yu, Jigao;  Zhang, Xian-Chun;  Xiang, Qiao-Ping
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GC-biased mutation  mitochondrial genome (mitogenome)  pentatricopeptide repeat (PPR) protein  plastid genome (plastome)  RNA editing  Selaginellaceae  
Mitochondrial genes from 18 angiosperms fill sampling gaps for phylogenomic inferences of the early diversification of flowering plants 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2022, 卷号: 60, 期号: 4, 页码: 773-788
Authors:  Xue, Jia-Yu;  Dong, Shan-Shan;  Wang, Ming-Qiang;  Song, Tian-Qiang;  Zhou, Guang-Can;  Li, Zhen;  Van de Peer, Yves;  Shao, Zhu-Qing;  Wang, Wei;  Chen, Min;  Zhang, Yan-Mei;  Sun, Xiao-Qin;  Chen, Hong-Feng;  Zhang, Yong-Xia;  Zhang, Shou-Zhou;  Chen, Fei;  Zhang, Liang-Sheng;  Cox, Cymon;  Liu, Yang;  Wang, Qiang;  Hang, Yue-Yu
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early angiosperm radiation  incongruence  mitochondrial genome  phylogenomics  systematic error  
Highly active repeat-mediated recombination in the mitogenome of the holoparasitic plant Aeginetia indica 期刊论文
FRONTIERS IN PLANT SCIENCE, 2022, 卷号: 13
Authors:  Zhong, Yan;  Yu, Runxian;  Chen, Jingfang;  Liu, Ying;  Zhou, Renchao
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Aeginetia indica  mitochondrial genome  repeat-mediated recombination  intraspecific variation  HGT  
Capturing single-copy nuclear genes, organellar genomes, and nuclear ribosomal DNA from deep genome skimming data for plant phylogenetics: A case study in Vitaceae 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2021, 卷号: 59, 期号: 5, 页码: 1124-1138
Authors:  Liu, Bin-Bin;  Ma, Zhi-Yao;  Ren, Chen;  Hodel, Richard G. J.;  Sun, Miao;  Liu, Xiu-Qun;  Liu, Guang-Ning;  Hong, De-Yuan;  Zimmer, Elizabeth A.;  Wen, Jun
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deep genome skimming  Hyb-Seq  mitochondrial genes  nuclear ribosomal DNA  single-copy nuclear genes  Vitaceae  
Mitochondrial Phylogenomics of Fagales Provides Insights Into Plant Mitogenome Mosaic Evolution 期刊论文
FRONTIERS IN PLANT SCIENCE, 2021, 卷号: 12
Authors:  Feng, Yanlei;  Xiang, Xiaoguo;  Akhter, Delara;  Pan, Ronghui;  Fu, Zhixi;  Jin, Xiaohua
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mitochondrial genome  Fagales  horizontal transfer  evolution  genome size variation  
The complete mitochondrial genome of Norfolk Robin (Petroica multicolor: Petroicidae), an endemic endangered species in Norfolk Island 期刊论文
MITOCHONDRIAL DNA PART B-RESOURCES, 2020, 卷号: 5, 期号: 3, 页码: 2366-2367
Authors:  Zhu, Zirui;  Gao, Xiang;  Hu, Yiheng
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Petroica multicolor  Endangered species  mitochondrial genome  phylogenetic analysis  
Distinctive evolutionary pattern of organelle genomes linked to the nuclear genome in Selaginellaceae 期刊论文
PLANT JOURNAL, 2020, 卷号: 104, 期号: 6, 页码: 1657-1672
Authors:  Kang, Jong-Soo;  Zhang, Hong-Rui;  Wang, Ya-Rong;  Liang, Si-Qi;  Mao, Zhi-Yuan;  Zhang, Xian-Chun;  Xiang, Qiao-Ping
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Selaginella  plastid genome  mitochondrial genome  genome evolution  convergent evolution  RecA  
Phylogenomics of Orchidaceae based on plastid and mitochondrial genomes 期刊论文
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2019, 卷号: 139
Authors:  Li, Yun-Xia;  Li, Zhang-Hai;  Schuiteman, Andre;  Chase, Mark W.;  Li, Jian-Wu;  Huang, Wei-Chang;  Hidayat, Arief;  Wu, Sha-Sha;  Jin, Xiao-Hua
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Cypripedioideae  Mitochondrial genome  Mycoheterotrophic orchids  Orchidaceae  Plastid genome  Vanilloideae  
Complete mitochondrial genome sequence of Anthoceros angustus: conservative evolution of the mitogenomes in hornworts 期刊论文
BRYOLOGIST, 2018, 卷号: 121, 期号: 1, 页码: 14-22
Authors:  Dong, Shanshan;  Xue, Jia-Yu;  Zhang, Shouzhou;  Zhang, Li;  Wu, Hong;  Chen, Zhiduan;  Goffinet, Bernard;  Liu, Yang
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Mitochondrial genome  genome structures  evolution  hornwort  Anthoceros angustus  
Mitochondrial Phylogenomics of Early Land Plants: Mitigating the Effects of Saturation, Compositional Heterogeneity, and Codon-Usage Bias 期刊论文
SYSTEMATIC BIOLOGY, 2014, 卷号: 63, 期号: 6, 页码: 862-878
Authors:  Liu, Yang;  Cox, Cymon J.;  Wang, Wei;  Goffinet, Bernard
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Compositional heterogeneity  early land plants  evolutionary saturation  mitochondrial genome  phylogenomics  synonymous codon-usage bias