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Integrated phylogenomic analyses unveil reticulate evolution in Parthenocissus (Vitaceae), highlighting speciation dynamics in the Himalayan-Hengduan Mountains 期刊论文
NEW PHYTOLOGIST, 2023, 卷号: 238, 期号: 2, 页码: 888-903
作者:  Yu, Jinren;  Niu, Yanting;  You, Yichen;  Cox, Cymon J.;  Barrett, Russell L.;  Trias-Blasi, Anna;  Guo, Jing;  Wen, Jun;  Lu, Limin;  Chen, Zhiduan
Adobe PDF(4450Kb)  |  收藏  |  浏览/下载：28/0  |  提交时间：2024/03/07
biogeography  comprehensive approach  Himalayan-Hengduan Mountains region  Parthenocissus  phylogenetic discordance  reticulation  speciation reversal  
Phylogenomic conflict analyses in the apple genus Malus s.l. reveal widespread hybridization and allopolyploidy driving diversification, with insights into the complex biogeographic history in the Northern Hemisphere 期刊论文
JOURNAL OF INTEGRATIVE PLANT BIOLOGY, 2022, 卷号: 64, 期号: 5, 页码: 1020-1043
作者:  Liu, Bin-Bin;  Ren, Chen;  Kwak, Myounghai;  Hodel, Richard G. J.;  Xu, Chao;  He, Jian;  Zhou, Wen-Bin;  Huang, Chien-Hsun;  Ma, Hong;  Qian, Guan-Ze;  Hong, De-Yuan;  Wen, Jun
Adobe PDF(3053Kb)  |  收藏  |  浏览/下载：15/0  |  提交时间：2024/03/07
deep genome skimming  genomic discordance  historical biogeography  massive extinction  reticulate evolution  single-copy nuclear genes  
Phylogenomic approaches untangle early divergences and complex diversifications of the olive plant family 期刊论文
BMC BIOLOGY, 2022, 卷号: 20, 期号: 1
作者:  Dong, Wenpan;  Li, Enze;  Liu, Yanlei;  Xu, Chao;  Wang, Yushuang;  Liu, Kangjia;  Cui, Xingyong;  Sun, Jiahui;  Suo, Zhili;  Zhang, Zhixiang;  Wen, Jun;  Zhou, Shiliang
Adobe PDF(4457Kb)  |  收藏  |  浏览/下载：13/0  |  提交时间：2024/03/07
Ancient introgression  Gene tree conflict  Incomplete lineage sorting  Oleaceae  Phylogenomics  Rate heterogeneity  
Synthesis of Nuclear and Chloroplast Data Combined With Network Analyses Supports the Polyploid Origin of the Apple Tribe and the Hybrid Origin of the Maleae-Gillenieae Clade 期刊论文
FRONTIERS IN PLANT SCIENCE, 2022, 卷号: 12
作者:  Hodel, Richard G. J.;  Zimmer, Elizabeth A.;  Liu, Bin-Bin;  Wen, Jun
Adobe PDF(3910Kb)  |  收藏  |  浏览/下载：11/0  |  提交时间：2024/03/07
allopolyploidy  ancient hybridization  cytonuclear conflict  genome doubling  phylogenetic networks  phylogenomics  reticulate evolution  
Phylogenomics and biogeography of Catalpa (Bignoniaceae) reveal incomplete lineage sorting and three dispersal events 期刊论文
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2022, 卷号: 166
作者:  Dong, Wenpan;  Liu, Yanlei;  Li, Enze;  Xu, Chao;  Sun, Jiahui;  Li, Wenying;  Zhou, Shiliang;  Zhang, Zhixiang;  Suo, Zhili
Adobe PDF(2844Kb)  |  收藏  |  浏览/下载：7/0  |  提交时间：2024/03/07
Biogeography  Catalpa  Dispersal  Incomplete lineage sorting  Interspecific gene flow  Phylogenomics  
Phylogenomic analyses based on the plastid genome and concatenated nrDNA sequence data reveal cytonuclear discordance in genus Atractylodes (Asteraceae: Carduoideae) 期刊论文
FRONTIERS IN PLANT SCIENCE, 2022, 卷号: 13
作者:  Liu, Jinxin;  Shi, Mengmeng;  Zhang, Zhaolei;  Xie, Hongbo;  Kong, Weijun;  Wang, Qiuling;  Zhao, Xinlei;  Zhao, Chunying;  Lin, Yulin;  Zhang, Xiaoxia;  Shi, Linchun
Adobe PDF(7443Kb)  |  收藏  |  浏览/下载：8/0  |  提交时间：2024/03/07
Atractylodes  plastid genome  nrDNA concatenated sequence  phylogeny  cyto-nuclear discordance  
Can plastid genome sequencing be used for species identification in Lauraceae? 期刊论文
BOTANICAL JOURNAL OF THE LINNEAN SOCIETY, 2021, 卷号: 197, 期号: 1, 页码: 1-14
作者:  Liu, Zhi-Fang;  Ma, Hui;  Ci, Xiu-Qin;  Li, Lang;  Song, Yu;  Liu, Bing;  Li, Hsi-Wen;  Wang, Shu-Li;  Qu, Xiao-Jian;  Hu, Jian-Lin;  Zhang, Xiao-Yan;  Conran, John G.;  Twyford, Alex D.;  Yang, Jun-Bo;  Hollingsworth, Peter M.;  Li, Jie
Adobe PDF(2547Kb)  |  收藏  |  浏览/下载：81/0  |  提交时间：2023/02/24
cytonuclear discordance  DNA barcoding  nrDNA  phylogenetics  plastomes  
Multilocus species tree analyses resolve the ancient radiation of the subtribe Zizaniinae (Poaceae) 期刊论文
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2015, 卷号: 84, 页码: 232-239
作者:  Tang, Liang;  Zou, Xin-hui;  Zhang, Lin-bin;  Ge, Song
Adobe PDF(1289Kb)  |  收藏  |  浏览/下载：64/0  |  提交时间：2022/09/13
Ancient rapid radiation  Incomplete lineage sorting  Multilocus data  Species tree  Zizaniinae  
Phylogenetic relationships, possible ancient hybridization, and biogeographic history of Abies (Pinaceae) based on data from nuclear, plastid, and mitochondrial genomes 期刊论文
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2015, 卷号: 82, 页码: 1-14
作者:  Xiang, Qiao-Ping;  Wei, Ran;  Shao, Yi-Zhen;  Yang, Zu-Yu;  Wang, Xiao-Quan;  Zhang, Xian-Chun
Adobe PDF(3156Kb)  |  收藏  |  浏览/下载：77/0  |  提交时间：2022/09/13
Ancient hybridization  Genome conflict  Northern hemisphere disjunction  Out of western North America  Section Balsamea  
Analysis of plastid and nuclear DNA data in plant phylogenetics—evaluation and improvement 期刊论文
SCIENCE CHINA Life Sciences, 2014, 卷号: 57, 期号: 3, 页码: 280–286
作者:  Wei Wang;  Hong-Lei Li;  Zhi-Duan Chen
Adobe PDF(431Kb)  |  收藏  |  浏览/下载：131/0  |  提交时间：2018/12/05