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Phylogenomic conflict analyses in the apple genus Malus s.l. reveal widespread hybridization and allopolyploidy driving diversification, with insights into the complex biogeographic history in the Northern Hemisphere 期刊论文
JOURNAL OF INTEGRATIVE PLANT BIOLOGY, 2022, 卷号: 64, 期号: 5, 页码: 1020-1043
作者:  Liu, Bin-Bin;  Ren, Chen;  Kwak, Myounghai;  Hodel, Richard G. J.;  Xu, Chao;  He, Jian;  Zhou, Wen-Bin;  Huang, Chien-Hsun;  Ma, Hong;  Qian, Guan-Ze;  Hong, De-Yuan;  Wen, Jun
Adobe PDF(3053Kb)  |  收藏  |  浏览/下载：17/0  |  提交时间：2024/03/07
deep genome skimming  genomic discordance  historical biogeography  massive extinction  reticulate evolution  single-copy nuclear genes  
Phylogenomic approaches untangle early divergences and complex diversifications of the olive plant family 期刊论文
BMC BIOLOGY, 2022, 卷号: 20, 期号: 1
作者:  Dong, Wenpan;  Li, Enze;  Liu, Yanlei;  Xu, Chao;  Wang, Yushuang;  Liu, Kangjia;  Cui, Xingyong;  Sun, Jiahui;  Suo, Zhili;  Zhang, Zhixiang;  Wen, Jun;  Zhou, Shiliang
Adobe PDF(4457Kb)  |  收藏  |  浏览/下载：15/0  |  提交时间：2024/03/07
Ancient introgression  Gene tree conflict  Incomplete lineage sorting  Oleaceae  Phylogenomics  Rate heterogeneity  
NOVOWrap: An automated solution for plastid genome assembly and structure standardization 期刊论文
MOLECULAR ECOLOGY RESOURCES, 2021, 卷号: 21, 期号: 6, 页码: 2177-2186
作者:  Wu, Ping;  Chen, Hao;  Xu, Chao;  Yang, Jie;  Zhang, Xian Chun;  Zhou, Shi Liang
Adobe PDF(924Kb)  |  收藏  |  浏览/下载：74/1  |  提交时间：2023/02/24
assembly  plastid genome  standardized structure  
Evolutionary and phylogenetic aspects of the chloroplast genome of Chaenomeles species 期刊论文
SCIENTIFIC REPORTS, 2020, 卷号: 10, 期号: 1
作者:  Sun, Jiahui;  Wang, Yiheng;  Liu, Yanlei;  Xu, Chao;  Yuan, Qingjun;  Guo, Lanping;  Huang, Luqi
Adobe PDF(5382Kb)  |  收藏  |  浏览/下载：101/0  |  提交时间：2022/03/01
Molecular phylogeny and species delimitation of Stachyuraceae: Advocating a herbarium specimen-based phylogenomic approach in resolving species boundaries 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2020, 卷号: 58, 期号: 5, 页码: 710-724
作者:  Su, Jun-Xia;  Dong, Cong-Cong;  Niu, Yan-Ting;  Lu, Li-Min;  Xu, Chao;  Liu, Bing;  Zhou, Shi-Liang;  Lu, An-Ming;  Zhu, Yu-Ping;  Wen, Jun;  Chen, Zhi-Duan
Adobe PDF(1772Kb)  |  收藏  |  浏览/下载：106/0  |  提交时间：2022/03/01
chloroplast genome  DNA reconstruction  phylogeny  specimen-based taxon sampling  Stachyuraceae  
Phylogenetic Resolution in Juglans Based on Complete Chloroplast Genomes and Nuclear DNA Sequences 期刊论文
FRONTIERS IN PLANT SCIENCE, 2017, 卷号: 8
作者:  Dong, Wenpan;  Xu, Chao;  Li, Wenqing;  Xie, Xiaoman;  Lu, Yizeng;  Liu, Yanlei;  Jin, Xiaobai;  Suo, Zhili
Adobe PDF(1621Kb)  |  收藏  |  浏览/下载：78/0  |  提交时间：2022/03/28
Juglans  complete chloroplast genome  small inversion  internal transcribed spacer  ubiquitin ligase gene  phylogeny  
Comparative Analysis of Six Lagerstroemia Complete Chloroplast Genomes 期刊论文
FRONTIERS IN PLANT SCIENCE, 2017, 卷号: 8
作者:  Xu, Chao;  Dong, Wenpan;  Li, Wenqing;  Lu, Yizeng;  Xie, Xiaoman;  Jin, Xiaobai;  Shi, Jipu;  He, Kaihong;  Suo, Zhili
Adobe PDF(1817Kb)  |  收藏  |  浏览/下载：130/0  |  提交时间：2022/03/28
Lagerstroemia  chloroplast genome  comparative genomics  simple repeat sequence  sequence divergence  plastid marker  phylogeny  
ycf1, the most promising plastid DNA barcode of land plants 期刊论文
SCIENTIFIC REPORTS, 2015, 卷号: 5
作者:  Dong, Wenpan;  Xu, Chao;  Li, Changhao;  Sun, Jiahui;  Zuo, Yunjuan;  Shi, Shuo;  Cheng, Tao;  Guo, Junjie;  Zhou, Shiliang
Adobe PDF(460Kb)  |  收藏  |  浏览/下载：98/0  |  提交时间：2022/09/13
Sequencing Angiosperm Plastid Genomes Made Easy: A Complete Set of Universal Primers and a Case Study on the Phylogeny of Saxifragales 期刊论文
GENOME BIOLOGY AND EVOLUTION, 2013, 卷号: 5, 期号: 5, 页码: 989-997
作者:  Dong, Wenpan;  Xu, Chao;  Cheng, Tao;  Lin, Kui;  Zhou, Shiliang
Adobe PDF(323Kb)  |  收藏  |  浏览/下载：44/0  |  提交时间：2023/04/25
plastid genome  universal primers  Saxifragales  
Complete Chloroplast Genome of Sedum sarmentosum and Chloroplast Genome Evolution in Saxifragales 期刊论文
PLOS ONE, 2013, 卷号: 8, 期号: 10
作者:  Dong, Wenpan;  Xu, Chao;  Cheng, Tao;  Zhou, Shiliang
Adobe PDF(2082Kb)  |  收藏  |  浏览/下载：36/0  |  提交时间：2023/04/25