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Mitochondrial genes from 18 angiosperms fill sampling gaps for phylogenomic inferences of the early diversification of flowering plants 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2022, 卷号: 60, 期号: 4, 页码: 773-788
作者:  Xue, Jia-Yu;  Dong, Shan-Shan;  Wang, Ming-Qiang;  Song, Tian-Qiang;  Zhou, Guang-Can;  Li, Zhen;  Van de Peer, Yves;  Shao, Zhu-Qing;  Wang, Wei;  Chen, Min;  Zhang, Yan-Mei;  Sun, Xiao-Qin;  Chen, Hong-Feng;  Zhang, Yong-Xia;  Zhang, Shou-Zhou;  Chen, Fei;  Zhang, Liang-Sheng;  Cox, Cymon;  Liu, Yang;  Wang, Qiang;  Hang, Yue-Yu
Adobe PDF(1723Kb)  |  收藏  |  浏览/下载：11/0  |  提交时间：2024/03/07
early angiosperm radiation  incongruence  mitochondrial genome  phylogenomics  systematic error  
Phylogenomic conflict analyses in the apple genus Malus s.l. reveal widespread hybridization and allopolyploidy driving diversification, with insights into the complex biogeographic history in the Northern Hemisphere 期刊论文
JOURNAL OF INTEGRATIVE PLANT BIOLOGY, 2022, 卷号: 64, 期号: 5, 页码: 1020-1043
作者:  Liu, Bin-Bin;  Ren, Chen;  Kwak, Myounghai;  Hodel, Richard G. J.;  Xu, Chao;  He, Jian;  Zhou, Wen-Bin;  Huang, Chien-Hsun;  Ma, Hong;  Qian, Guan-Ze;  Hong, De-Yuan;  Wen, Jun
Adobe PDF(3053Kb)  |  收藏  |  浏览/下载：15/0  |  提交时间：2024/03/07
deep genome skimming  genomic discordance  historical biogeography  massive extinction  reticulate evolution  single-copy nuclear genes  
Phylogenomic approaches untangle early divergences and complex diversifications of the olive plant family 期刊论文
BMC BIOLOGY, 2022, 卷号: 20, 期号: 1
作者:  Dong, Wenpan;  Li, Enze;  Liu, Yanlei;  Xu, Chao;  Wang, Yushuang;  Liu, Kangjia;  Cui, Xingyong;  Sun, Jiahui;  Suo, Zhili;  Zhang, Zhixiang;  Wen, Jun;  Zhou, Shiliang
Adobe PDF(4457Kb)  |  收藏  |  浏览/下载：13/0  |  提交时间：2024/03/07
Ancient introgression  Gene tree conflict  Incomplete lineage sorting  Oleaceae  Phylogenomics  Rate heterogeneity  
Synthesis of Nuclear and Chloroplast Data Combined With Network Analyses Supports the Polyploid Origin of the Apple Tribe and the Hybrid Origin of the Maleae-Gillenieae Clade 期刊论文
FRONTIERS IN PLANT SCIENCE, 2022, 卷号: 12
作者:  Hodel, Richard G. J.;  Zimmer, Elizabeth A.;  Liu, Bin-Bin;  Wen, Jun
Adobe PDF(3910Kb)  |  收藏  |  浏览/下载：13/0  |  提交时间：2024/03/07
allopolyploidy  ancient hybridization  cytonuclear conflict  genome doubling  phylogenetic networks  phylogenomics  reticulate evolution  
Plastid phylogenomic analyses of the Selaginella sanguinolenta group (Selaginellaceae) reveal conflict signatures resulting from sequence types, outlier genes, and pervasive RNA editing 期刊论文
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2022, 卷号: 173
作者:  Zhang, Meng-Hua;  Xiang, Qiao-Ping;  Zhang, Xian-Chun
Adobe PDF(5084Kb)  |  收藏  |  浏览/下载：13/0  |  提交时间：2024/03/07
Alternative topologies  Gene-tree conflict  Plastome  Phylogenetic signal  Selaginella sanguinolenta group  Species trees  
Phylogenomics resolves the deep phylogeny of seed plants and indicates partial convergent or homoplastic evolution between Gnetales and angiosperms 期刊论文
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 2018, 卷号: 285, 期号: 1881
作者:  Ran, Jin-Hua;  Shen, Ting-Ting;  Wang, Ming-Ming;  Wang, Xiao-Quan
Adobe PDF(728Kb)  |  收藏  |  浏览/下载：95/0  |  提交时间：2022/02/25
seed plants  gymnosperms  Gnepine hypothesis  phylotranscriptomics  phylogeny  homoplasy  
Deep phylogenetic incongruence in the angiosperm clade Rosidae 期刊论文
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2015, 卷号: 83, 页码: 156-166
作者:  Sun, Miao;  Soltis, Douglas E.;  Soltis, Pamela S.;  Zhu, Xinyu;  Burleigh, J. Gordon;  Chen, Zhiduan
Adobe PDF(588Kb)  |  收藏  |  浏览/下载：79/0  |  提交时间：2022/09/13
Hybridization  Introgression  Incomplete lineage sorting  COM clade  Incongruence  Phylogenomics  
Phylogenetic relationships, possible ancient hybridization, and biogeographic history of Abies (Pinaceae) based on data from nuclear, plastid, and mitochondrial genomes 期刊论文
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2015, 卷号: 82, 页码: 1-14
作者:  Xiang, Qiao-Ping;  Wei, Ran;  Shao, Yi-Zhen;  Yang, Zu-Yu;  Wang, Xiao-Quan;  Zhang, Xian-Chun
Adobe PDF(3156Kb)  |  收藏  |  浏览/下载：78/0  |  提交时间：2022/09/13
Ancient hybridization  Genome conflict  Northern hemisphere disjunction  Out of western North America  Section Balsamea  
Analysis of plastid and nuclear DNA data in plant phylogenetics—evaluation and improvement 期刊论文
SCIENCE CHINA Life Sciences, 2014, 卷号: 57, 期号: 3, 页码: 280–286
作者:  Wei Wang;  Hong-Lei Li;  Zhi-Duan Chen
Adobe PDF(431Kb)  |  收藏  |  浏览/下载：132/0  |  提交时间：2018/12/05
Human coding RNA editing is generally nonadaptive 期刊论文
Proceedings of the National Academy of Sciences of the United States of America, 2014, 卷号: 111, 期号: 10, 页码: 3769–3774
作者:  Guixia Xua;  Jianzhi Zhang
Adobe PDF(1055Kb)  |  收藏  |  浏览/下载：116/0  |  提交时间：2018/12/07