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A chromosome-scale genome and transcriptomic analysis of the endangered tropical tree Vatica mangachapoi (Dipterocarpaceae) 期刊论文
DNA RESEARCH, 2022, 卷号: 29, 期号: 2
作者:  Tang, Liang;  Liao, Xuezhu;  Tembrock, Luke R.;  Ge, Song;  Wu, Zhiqiang
Adobe PDF(910Kb)  |  收藏  |  浏览/下载：11/0  |  提交时间：2024/03/07
dipterocarp forests  genome assembly  whole-genome duplication  tree genomics  conservation biology  
Improved pea reference genome and pan-genome highlight genomic features and evolutionary characteristics 期刊论文
NATURE GENETICS, 2022, 卷号: 54, 期号: 10, 页码: 1553+
作者:  Yang, Tao;  Liu, Rong;  Luo, Yingfeng;  Hu, Songnian;  Wang, Dong;  Wang, Chenyu;  Pandey, Manish K.;  Ge, Song;  Xu, Quanle;  Li, Nana;  Li, Guan;  Huang, Yuning;  Saxena, Rachit K.;  Ji, Yishan;  Li, Mengwei;  Yan, Xin;  He, Yuhua;  Liu, Yujiao;  Wang, Xuejun;  Xiang, Chao;  Varshney, Rajeev K.;  Ding, Hanfeng;  Gao, Shenghan;  Zong, Xuxiao
Adobe PDF(5518Kb)  |  收藏  |  浏览/下载：14/0  |  提交时间：2024/03/07
Identification of long noncoding natural antisense transcripts (lncNATs) correlated with drought stress response in wild rice (Oryza nivara) 期刊论文
BMC GENOMICS, 2021, 卷号: 22, 期号: 1
作者:  Xu, Yong-Chao;  Zhang, Jie;  Zhang, Dong-Yan;  Nan, Ying-Hui;  Ge, Song;  Guo, Ya-Long
Adobe PDF(3950Kb)  |  收藏  |  浏览/下载：74/0  |  提交时间：2023/02/24
Drought stress  Long noncoding RNA  O  nivara  Strand-specific RNA-seq  Wild rice  
The Tetracentron genome provides insight into the early evolution of eudicots and the formation of vessel elements 期刊论文
GENOME BIOLOGY, 2020, 卷号: 21, 期号: 1
作者:  Liu, Ping-Li;  Zhang, Xi;  Mao, Jian-Feng;  Hong, Yan-Ming;  Zhang, Ren-Gang;  Yilan, E.;  Nie, Shuai;  Jia, Kaihua;  Jiang, Chen-Kun;  He, Jian;  Shen, Weiwei;  He, Qizouhong;  Zheng, Wenqing;  Abbas, Samar;  Jewaria, Pawan Kumar;  Tian, Xuechan;  Liu, Chang-jun;  Jiang, Xiaomei;  Yin, Yafang;  Liu, Bo;  Wang, Li;  Jin, Biao;  Ma, Yongpeng;  Qiu, Zongbo;  Baluska, Frantisek;  Samaj, Jozef;  He, Xinqiang;  Niu, Shihui;  Xie, Jianbo;  Xie, Lei;  Xu, Huimin;  Kong, Hongzhi;  Ge, Song;  Dixon, Richard A.;  Jiao, Yuannian;  Lin, Jinxing
Adobe PDF(3373Kb)  |  收藏  |  浏览/下载：119/1  |  提交时间：2022/03/01
Tetracentron sinense  Vessel  Phylogenomic  Whole genome duplication  VND7  Resequencing  Genetic diversity  
Decrease of gene expression diversity during domestication of animals and plants 期刊论文
BMC EVOLUTIONARY BIOLOGY, 2019, 卷号: 19
作者:  Liu, Wei;  Chen, Lei;  Zhang, Shilai;  Hu, Fengyi;  Wang, Zheng;  Lyu, Jun;  Wang, Bao;  Xiang, Hui;  Zhao, Ruoping;  Tian, Zhixi;  Ge, Song;  Wang, Wen
Adobe PDF(845Kb)  |  收藏  |  浏览/下载：91/0  |  提交时间：2022/01/06
Domestication  Decrease  Gene expression diversity  
Parallel Speciation of Wild Rice Associated with Habitat Shifts 期刊论文
MOLECULAR BIOLOGY AND EVOLUTION, 2019, 卷号: 36, 期号: 5, 页码: 875-889
作者:  Cai, Zhe;  Zhou, Lian;  Ren, Ning-Ning;  Xu, Xun;  Liu, Rong;  Huang, Lei;  Zheng, Xiao-Ming;  Meng, Qing-Lin;  Du, Yu-Su;  Wang, Mei-Xia;  Geng, Mu-Fan;  Chen, Wen-Li;  Jing, Chun-Yan;  Zou, Xin-Hui;  Guo, Jie;  Chen, Cheng-Bin;  Zeng, Hua-Zhong;  Liang, Yun-Tao;  Wei, Xing-Hua;  Guo, Ya-Long;  Zhou, Hai-Fei;  Zhang, Fu-Min;  Ge, Song
Adobe PDF(887Kb)  |  收藏  |  浏览/下载：2670/0  |  提交时间：2022/01/06
parallel speciation  reproductive isolation  adaptation  divergent selection  wild rice  
Population genetics and evolutionary history of Miscanthus species in China 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2019, 卷号: 57, 期号: 5, 页码: 530-542
作者:  Li, Shan-Shan;  Zhou, Hai-Fei;  Chen, Wen-Li;  Yan, Juan;  Cai, Zhe;  Wei, Ruo-Xun;  Chen, Chih-Hui;  Han, Bin;  Li, Jian-Qiang;  Sang, Tao;  Ge, Song
Adobe PDF(1772Kb)  |  收藏  |  浏览/下载：143/0  |  提交时间：2022/01/06
energy crop  genetic structure  Miscanthus  population dynamics  speciation  
Population genetics and evolutionary history of the wild rice species Oryza rufipogon and O-nivara in Sri Lanka 期刊论文
ECOLOGY AND EVOLUTION, 2018, 卷号: 8, 期号: 23, 页码: 12056-12065
作者:  Sandamal, Salinda;  Tennakoon, Asanka;  Meng, Qing-Lin;  Marambe, Buddhi;  Ratnasekera, Disna;  Melo, Arthur;  Ge, Song
Adobe PDF(1252Kb)  |  收藏  |  浏览/下载：85/0  |  提交时间：2022/02/25
evolutionary history  O. nivara  O. rufipogon  population genetics  Sri Lanka  
Natural Variation in the Promoter of GSE5 Contributes to Grain Size Diversity in Rice 期刊论文
MOLECULAR PLANT, 2017, 卷号: 10, 期号: 5, 页码: 685-694
作者:  Duan, Penggen;  Xu, Jinsong;  Zeng, Dali;  Zhang, Baolan;  Geng, Mufan;  Zhang, Guozheng;  Huang, Ke;  Huang, Luojiang;  Xu, Ran;  Ge, Song;  Qian, Qian;  Li, Yunhai
Adobe PDF(929Kb)  |  收藏  |  浏览/下载：91/0  |  提交时间：2022/03/28
rice  natural variation  GSE5  grain size  cell proliferation  
The impact and origin of copy number variations in the Oryza species 期刊论文
BMC GENOMICS, 2016, 卷号: 17
作者:  Bai, Zetao;  Chen, Jinfeng;  Liao, Yi;  Wang, Meijiao;  Liu, Rong;  Ge, Song;  Wing, Rod A.;  Chen, Mingsheng
Adobe PDF(2514Kb)  |  收藏  |  浏览/下载：98/0  |  提交时间：2022/07/08
Oryza species  Copy number variation (CNV)  NGS-based survey  CNV genes  Mutation mechanisms