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A well-supported nuclear phylogeny of Poaceae and implications for the evolution of C4 photosynthesis 期刊论文
MOLECULAR PLANT, 2022, 卷号: 15, 期号: 4, 页码: 755-777
作者:  Huang, Weichen;  Zhang, Lin;  Columbus, J. Travis;  Hu, Yi;  Zhao, Yiyong;  Tang, Lin;  Guo, Zhenhua;  Chen, Wenli;  McKain, Michael;  Bartlett, Madelaine;  Huang, Chien-Hsun;  Li, De-Zhu;  Ge, Song;  Ma, Hong
Adobe PDF(3240Kb)  |  收藏  |  浏览/下载：9/0  |  提交时间：2024/03/07
Gramineae  transcriptome  nuclear phylogeny  molecular clock  C4 photosynthesis  ppc gene evolution  
Phylogenomic conflict analyses in the apple genus Malus s.l. reveal widespread hybridization and allopolyploidy driving diversification, with insights into the complex biogeographic history in the Northern Hemisphere 期刊论文
JOURNAL OF INTEGRATIVE PLANT BIOLOGY, 2022, 卷号: 64, 期号: 5, 页码: 1020-1043
作者:  Liu, Bin-Bin;  Ren, Chen;  Kwak, Myounghai;  Hodel, Richard G. J.;  Xu, Chao;  He, Jian;  Zhou, Wen-Bin;  Huang, Chien-Hsun;  Ma, Hong;  Qian, Guan-Ze;  Hong, De-Yuan;  Wen, Jun
Adobe PDF(3053Kb)  |  收藏  |  浏览/下载：15/0  |  提交时间：2024/03/07
deep genome skimming  genomic discordance  historical biogeography  massive extinction  reticulate evolution  single-copy nuclear genes  
Phylotranscriptomic insights into Asteraceae diversity, polyploidy, and morphological innovation 期刊论文
JOURNAL OF INTEGRATIVE PLANT BIOLOGY, 2021, 卷号: 63, 期号: 7, 页码: 1273-1293
作者:  Zhang, Caifei;  Huang, Chien-Hsun;  Liu, Mian;  Hu, Yi;  Panero, Jose L.;  Luebert, Federico;  Gao, Tiangang;  Ma, Hong
Adobe PDF(2646Kb)  |  收藏  |  浏览/下载：84/0  |  提交时间：2023/02/24
biodiversity  compositae  morphological character evolution  phylogeny  transcriptome  whole-genome duplication  
The water lily genome and the early evolution of flowering plants 期刊论文
NATURE, 2020, 卷号: 577, 页码: 79-84
作者:  Zhang, Liangsheng;  Chen, Fei;  Zhang, Xingtan;  Li, Zhen;  Zhao, Yiyong;  Lohaus, Rolf;  Chang, Xiaojun;  Dong, Wei;  Ho, Simon Y. W.;  Liu, Xing;  Song, Aixia;  Chen, Junhao;  Guo, Wenlei;  Wang, Zhengjia;  Zhuang, Yingyu;  Wang, Haifeng;  Chen, Xuequn;  Hu, Juan;  Liu, Yanhui;  Qin, Yuan;  Wang, Kai;  Dong, Shanshan;  Liu, Yang;  Zhang, Shouzhou;  Yu, Xianxian;  Wu, Qian;  Wang, Liangsheng;  Yan, Xueqing;  Jiao, Yuannian;  Kong, Hongzhi;  Zhou, Xiaofan;  Yu, Cuiwei;  Chen, Yuchu;  Li, Fan;  Wang, Jihua;  Chen, Wei;  Chen, Xinlu;  Jia, Qidong;  Zhang, Chi;  Jiang, Yifan;  Zhang, Wanbo;  Liu, Guanhua;  Fu, Jianyu;  Chen, Feng;  Ma, Hong;  Van de Peer, Yves;  Tang, Haibao
Adobe PDF(56231Kb)  |  收藏  |  浏览/下载：115/1  |  提交时间：2022/03/01
The hornwort genome and early land plant evolution 期刊论文
NATURE PLANTS, 2020, 卷号: 6, 期号: 2, 页码: 107-118
作者:  Zhang, Jian;  Fu, Xin-Xing;  Li, Rui-Qi;  Zhao, Xiang;  Liu, Yang;  Li, Ming-He;  Zwaenepoel, Arthur;  Ma, Hong;  Goffinet, Bernard;  Guan, Yan-Long;  Xue, Jia-Yu;  Liao, Yi-Ying;  Wang, Qing-Feng;  Wang, Qing-Hua;  Wang, Jie-Yu;  Zhang, Guo Qiang;  Wang, Zhi-Wen;  Jia, Yu;  Wang, Mei-Zhi;  Dong, Shan-Shan;  Yang, Jian-Fen;  Jiao, Yuan-Nian;  Guo, Ya-Long;  Kong, Hong-Zhi;  Lu, An-Ming;  Yang, Huan-Ming;  Zhang, Shou-Zhou;  Van de Peer, Yves;  Liu, Zhong-Jian;  Chen, Zhi-Duan
Adobe PDF(1845Kb)  |  收藏  |  浏览/下载：115/1  |  提交时间：2022/03/01
Phylogenomic detection and functional prediction of genes potentially important for plant meiosis 期刊论文
GENE, 2018, 卷号: 643, 页码: 83-97
作者:  Zhang, Luoyan;  Kong, Hongzhi;  Ma, Hong;  Yang, Ji
Adobe PDF(1589Kb)  |  收藏  |  浏览/下载：85/0  |  提交时间：2022/02/25
Meiosis  Meiotic genes  Phylogenomic inference  Functional prediction  Gene duplication  
Cytological and Transcriptomic Analyses Reveal Important Roles of CLE19 in Pollen Exine Formation 期刊论文
PLANT PHYSIOLOGY, 2017, 卷号: 175, 期号: 3, 页码: 1186-1202
作者:  Wang, Shuangshuang;  Lu, Jianan;  Song, Xiu-Fen;  Ren, Shi-Chao;  You, Chenjiang;  Xu, Jie;  Liu, Chun-Ming;  Ma, Hong;  Chang, Fang
Adobe PDF(1362Kb)  |  收藏  |  浏览/下载：96/0  |  提交时间：2022/03/28
The Compositae Tree of Life in the age of phylogenomics 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2017, 卷号: 55, 期号: 4, 页码: 405-410
作者:  Mandel, Jennifer R.;  Barker, Michael S.;  Bayer, Randall J.;  Dikow, Rebecca B.;  Gao, Tian-Gang;  Jones, Katy E.;  Keeley, Sterling;  Kilian, Norbert;  Ma, Hong;  Siniscalchi, Carolina M.;  Susanna, Alfonso;  Thapa, Ramhari;  Watson, Linda;  Funk, Vicki A.
Adobe PDF(1354Kb)  |  收藏  |  浏览/下载：95/0  |  提交时间：2022/03/28
chloroplast  gene-tree  genomes  Hyb-Seq  next-generation sequencing  nuclear  phylogenetics  sequence capture  transcriptome  
Multiple Polyploidization Events across Asteraceae with Two Nested Events in the Early History Revealed by Nuclear Phylogenomics 期刊论文
MOLECULAR BIOLOGY AND EVOLUTION, 2016, 卷号: 33, 期号: 11, 页码: 2820-2835
作者:  Huang, Chien-Hsun;  Zhang, Caifei;  Liu, Mian;  Hu, Yi;  Gao, Tiangang;  Qi, Ji;  Ma, Hong
Adobe PDF(1755Kb)  |  收藏  |  浏览/下载：73/0  |  提交时间：2022/07/08
Asteraceae  divergence time estimation  orthologous nuclear gene  phylogeny  transcriptome  whole-genome duplication  
The Tree of Life: China project 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2016, 卷号: 54, 期号: 4, 页码: CP5-276
作者:  Chen, Zhi-Duan;  Lu, An-Ming;  Zhang, Shou-Zhou;  Wang, Qing-Feng;  Liu, Zhong-Jian;  Li, De-Zhu;  Ma, Hong;  Li, Jian-Hua;  Soltis, Douglas E.;  Soltis, Pamela S.;  Wen, Jun
Adobe PDF(107Kb)  |  收藏  |  浏览/下载：85/0  |  提交时间：2022/07/08