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Phylogenomic conflict analyses in the apple genus Malus s.l. reveal widespread hybridization and allopolyploidy driving diversification, with insights into the complex biogeographic history in the Northern Hemisphere 期刊论文
JOURNAL OF INTEGRATIVE PLANT BIOLOGY, 2022, 卷号: 64, 期号: 5, 页码: 1020-1043
作者:  Liu, Bin-Bin;  Ren, Chen;  Kwak, Myounghai;  Hodel, Richard G. J.;  Xu, Chao;  He, Jian;  Zhou, Wen-Bin;  Huang, Chien-Hsun;  Ma, Hong;  Qian, Guan-Ze;  Hong, De-Yuan;  Wen, Jun
Adobe PDF(3053Kb)  |  收藏  |  浏览/下载：15/0  |  提交时间：2024/03/07
deep genome skimming  genomic discordance  historical biogeography  massive extinction  reticulate evolution  single-copy nuclear genes  
Genomes of leafy and leafless Platanthera orchids illuminate the evolution of mycoheterotrophy 期刊论文
NATURE PLANTS, 2022, 卷号: 8, 期号: 4, 页码: 373+
作者:  Li, Ming-He;  Liu, Ke-Wei;  Li, Zhen;  Lu, Hsiang-Chia;  Ye, Qin-Liang;  Zhang, Diyang;  Wang, Jie-Yu;  Li, Yu-Feng;  Zhong, Zhi-Ming;  Liu, Xuedie;  Yu, Xia;  Liu, Ding-Kun;  Tu, Xiong-De;  Liu, Bin;  Hao, Yang;  Liao, Xing-Yu;  Jiang, Yu-Ting;  Sun, Wei-Hong;  Chen, Jinliao;  Chen, Yan-Qiong;  Ai, Ye;  Zhai, Jun-Wen;  Wu, Sha-Sha;  Zhou, Zhuang;  Hsiao, Yu-Yun;  Wu, Wan-Lin;  Chen, You-Yi;  Lin, Yu-Fu;  Hsu, Jui-Ling;  Li, Chia-Ying;  Wang, Zhi-Wen;  Zhao, Xiang;  Zhong, Wen-Ying;  Ma, Xiao-Kai;  Ma, Liang;  Huang, Jie;  Chen, Gui-Zhen;  Huang, Ming-Zhong;  Huang, Laiqiang;  Peng, Dong-Hui;  Luo, Yi-Bo;  Zou, Shuang-Quan;  Chen, Shi-Pin;  Lan, Siren;  Tsai, Wen-Chieh;  van de Peer, Yves;  Liu, Zhong-Jian
Adobe PDF(8532Kb)  |  收藏  |  浏览/下载：11/0  |  提交时间：2024/03/07
Can plastid genome sequencing be used for species identification in Lauraceae? 期刊论文
BOTANICAL JOURNAL OF THE LINNEAN SOCIETY, 2021, 卷号: 197, 期号: 1, 页码: 1-14
作者:  Liu, Zhi-Fang;  Ma, Hui;  Ci, Xiu-Qin;  Li, Lang;  Song, Yu;  Liu, Bing;  Li, Hsi-Wen;  Wang, Shu-Li;  Qu, Xiao-Jian;  Hu, Jian-Lin;  Zhang, Xiao-Yan;  Conran, John G.;  Twyford, Alex D.;  Yang, Jun-Bo;  Hollingsworth, Peter M.;  Li, Jie
Adobe PDF(2547Kb)  |  收藏  |  浏览/下载：81/0  |  提交时间：2023/02/24
cytonuclear discordance  DNA barcoding  nrDNA  phylogenetics  plastomes  
Capturing single-copy nuclear genes, organellar genomes, and nuclear ribosomal DNA from deep genome skimming data for plant phylogenetics: A case study in Vitaceae 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2021, 卷号: 59, 期号: 5, 页码: 1124-1138
作者:  Liu, Bin-Bin;  Ma, Zhi-Yao;  Ren, Chen;  Hodel, Richard G. J.;  Sun, Miao;  Liu, Xiu-Qun;  Liu, Guang-Ning;  Hong, De-Yuan;  Zimmer, Elizabeth A.;  Wen, Jun
Adobe PDF(2650Kb)  |  收藏  |  浏览/下载：69/0  |  提交时间：2023/02/24
deep genome skimming  Hyb-Seq  mitochondrial genes  nuclear ribosomal DNA  single-copy nuclear genes  Vitaceae  
Plastid Genome Evolution in the Subtribe Calypsoinae (Epidendroideae, Orchiaaceae) 期刊论文
GENOME BIOLOGY AND EVOLUTION, 2020, 卷号: 12, 期号: 6, 页码: 867-870
作者:  Li, Zhang-Hai;  Jiang, Yan;  Ma, Xiao;  Li, Jian-Wu;  Yang, Jun-Bo;  Wu, Jian-Yong;  Jin, Xiao-Hua
Adobe PDF(306Kb)  |  收藏  |  浏览/下载：89/0  |  提交时间：2022/03/01
Corallorhiza  Calypsoinae  Danxiaorchis  plastome  Risleya  mycoheterotrophy  
The Tetracentron genome provides insight into the early evolution of eudicots and the formation of vessel elements 期刊论文
GENOME BIOLOGY, 2020, 卷号: 21, 期号: 1
作者:  Liu, Ping-Li;  Zhang, Xi;  Mao, Jian-Feng;  Hong, Yan-Ming;  Zhang, Ren-Gang;  Yilan, E.;  Nie, Shuai;  Jia, Kaihua;  Jiang, Chen-Kun;  He, Jian;  Shen, Weiwei;  He, Qizouhong;  Zheng, Wenqing;  Abbas, Samar;  Jewaria, Pawan Kumar;  Tian, Xuechan;  Liu, Chang-jun;  Jiang, Xiaomei;  Yin, Yafang;  Liu, Bo;  Wang, Li;  Jin, Biao;  Ma, Yongpeng;  Qiu, Zongbo;  Baluska, Frantisek;  Samaj, Jozef;  He, Xinqiang;  Niu, Shihui;  Xie, Jianbo;  Xie, Lei;  Xu, Huimin;  Kong, Hongzhi;  Ge, Song;  Dixon, Richard A.;  Jiao, Yuannian;  Lin, Jinxing
Adobe PDF(3373Kb)  |  收藏  |  浏览/下载：114/1  |  提交时间：2022/03/01
Tetracentron sinense  Vessel  Phylogenomic  Whole genome duplication  VND7  Resequencing  Genetic diversity  
Polyploidy Index and Its Implications for the Evolution of Polyploids 期刊论文
FRONTIERS IN GENETICS, 2019, 卷号: 10
作者:  Wang, Jinpeng;  Qin, Jun;  Sun, Pengchuan;  Ma, Xuelian;  Yu, Jigao;  Li, Yuxian;  Sun, Sangrong;  Lei, Tianyu;  Meng, Fanbo;  Wei, Chendan;  Liu, Xinyu;  Guo, He;  Liu, Xiaojian;  Xia, Ruiyan;  Li Wang;  Ge, Weina;  Song, Xiaoming;  Zhang, Lan;  Guo, Di;  Wang, Jinyu;  Baol, Shoutong;  Jiang, Shan;  Feng, Yishan;  Li, Xueping;  Paterson, Andrew H.;  Wang, Xiyin
Adobe PDF(3371Kb)  |  收藏  |  浏览/下载：97/0  |  提交时间：2022/01/06
polyploidy  angiosperm  P-index  genomics  bioinformatics  
Rhabdoxylon taiyuanense n. sp.: A new botryopterid fern from the Lower Permian of Shanxi Province, North China 期刊论文
PALAEOWORLD, 2017, 卷号: 26, 期号: 3, 页码: 489-499
作者:  Ma, Jing;  Wang, Shi-Jun;  Sun, Ke-Qin
Adobe PDF(277Kb)  |  收藏  |  浏览/下载：77/0  |  提交时间：2022/03/28
Permian  Taiyuan Formation  Coal ball  Botryopterid fern  Anatomy  Rhabdoxylon taiyuanense n. sp.  
The functional significance of complex floral colour pattern in a food-deceptive orchid 期刊论文
FUNCTIONAL ECOLOGY, 2016, 卷号: 30, 期号: 5, 页码: 721-732
作者:  Ma, Xiaokai;  Shi, Jun;  Banziger, Hans;  Sun, Yangna;  Guo, Yanyan;  Liu, Zhongjian;  Johnson, Steven D.;  Luo, Yibo
Adobe PDF(782Kb)  |  收藏  |  浏览/下载：101/0  |  提交时间：2022/07/08
advergence  ancestral character state reconstruction  bee vision  deception  evolutionary innovation  floral signals  mimicry  Paphiopedilum  pre-adaptation  
Diodonopteris, a new genus of the Paleozoic leptosporangiate fern family Botryopteridaceae, from the lower Permian of Shanxi Province, North China 期刊论文
REVIEW OF PALAEOBOTANY AND PALYNOLOGY, 2016, 卷号: 234, 页码: 11-24
作者:  Ma, Jing;  Wang, Shi-Jun;  He, Xue-Zhi;  He, Xiao-Yuan;  Ma, Shi-Min
Adobe PDF(16755Kb)  |  收藏  |  浏览/下载：81/0  |  提交时间：2022/07/08
Early leptosporangiate fern  Botryopteridaceae  Diodonopteris gen. nov.  Coal ball  Cisuralian  Cathaysian Flora