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Species delimitation of the liquorice tribe (Leguminosae: Glycyrrhizeae) based on phylogenomic and machine learning analyses 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2023, 卷号: 61, 期号: 1, 页码: 22-41
作者:  Duan, Lei;  Han, Li-Na;  Liu, Bin-Bin;  Leostrin, Artem;  Harris, A. J.;  Wang, Lin;  Arslan, Emine;  Ertugrul, Kuddisi;  Knyazev, Mikhail;  Hantemirova, Elena;  Wen, Jun;  Chen, Hong-Feng
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character evolution  Glycyrrhiza  machine learning analysis  medicinal group  phylogenomics  species delimitation  
Mapping Chinese annual gross primary productivity with eddy covariance measurements and machine learning 期刊论文
SCIENCE OF THE TOTAL ENVIRONMENT, 2023, 卷号: 857
作者:  Zhu, Xian-Jin;  Yu, Gui-Rui;  Chen, Zhi;  Zhang, Wei-Kang;  Han, Lang;  Wang, Qiu-Feng;  Chen, Shi-Ping;  Liu, Shao-Min;  Yan, Jun-Hua;  Zhang, Fa -Wei;  Zhao, Feng-Hua;  Li, Ying-Nian;  Zhang, Yi-Ping;  Shi, Pei -Li;  Zhu, Jiao-Jun;  Wu, Jia-Bing;  Zhao, Zhong-Hui;  Hao, Yan-Bin;  Sha, Li-Qing;  Zhang, Yu-Cui;  Jiang, Shi-Cheng;  Gu, Feng-Xue;  Wu, Zhi-Xiang;  Wang, Hui-Min;  Tan, Jun-Lei;  Zhang, Yang-Jian;  Zhou, Li;  Tang, Ya-Kun;  Jia, Bing-Rui;  Li, Yu-Qiang;  Song, Qing-Hai;  Dong, Gang;  Gao, Yan-Hong;  Jiang, Zheng-De;  Sun, Dan;  Wang, Jian-Lin;  He, Qi-Hua;  Li, Xin-Hu;  Wang, Fei;  Wei, Wen-Xue;  Deng, Zheng-Miao;  Hao, Xiang-Xiang;  Li, Yan;  Liu, Xiao-Li;  Zhang, Xi-Feng;  Zhu, Zhi-Lin
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Carbon cycle  Climate change  Eddy covariance  Terrestrial ecosystem  Machine learning  Scale extension  
Phylogenomic conflict analyses in the apple genus Malus s.l. reveal widespread hybridization and allopolyploidy driving diversification, with insights into the complex biogeographic history in the Northern Hemisphere 期刊论文
JOURNAL OF INTEGRATIVE PLANT BIOLOGY, 2022, 卷号: 64, 期号: 5, 页码: 1020-1043
作者:  Liu, Bin-Bin;  Ren, Chen;  Kwak, Myounghai;  Hodel, Richard G. J.;  Xu, Chao;  He, Jian;  Zhou, Wen-Bin;  Huang, Chien-Hsun;  Ma, Hong;  Qian, Guan-Ze;  Hong, De-Yuan;  Wen, Jun
Adobe PDF(3053Kb)  |  收藏  |  浏览/下载：14/0  |  提交时间：2024/03/07
deep genome skimming  genomic discordance  historical biogeography  massive extinction  reticulate evolution  single-copy nuclear genes  
Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2022 期刊论文
NUCLEIC ACIDS RESEARCH, 2022, 卷号: 50, 期号: D1, 页码: D27-D38
作者:  Xue, Yongbiao;  Bao, Yiming;  Zhang Zhang;  Zhao, Wenming;  Xiao, Jingfa;  He, Shun-min;  Zhang, Guoqing;  Li, Yixue;  Guoping, Zhao;  Chen, Runsheng;  Zeng, Jingyao;  Zhang, Yadong;  Shang, Yun-fei;  Mai, Jialin;  Shi, Shuo;  Lu, Mingming;  Bu, Congfan;  Zhang, Zhewen;  Du, Zhenglin;  Wang, Yinying;  Kang, Hongen;  Xu, Tianyi;  Hao, Lili;  Jia, Peilin;  Jiang, Shuai;  Qian, Qiheng;  Zhu, Tong-tong;  Shang, Yunfei;  Zong, Wenting;  Jin, Tong;  Zhang, Yuansheng;  Zou, Dong;  Zhang, Zhang;  Du, Qiang;  Feng, Changrui;  Ma, Lina;  Zhang, Sisi;  Wang, Anke;  Dong, Lili;  Wang, Yan-qing;  Liu, Wan;  Yan, Xing;  Ling, Yunchao;  Zhao, Guoping;  Zhou, Zhihua;  Kang, Wang;  Zhang, Tao;  Ma, Shuai;  Yan, Haoteng;  Liu, Zunpeng;  Ji, Zejun;  Cai, Yusheng;  Wang, Si;  Song, Moshi;  Ren, Jie;  Zhou, Qi;  Qu, Jing;  Zhang, Weiqi;  Liu, Guanghui;  Chen, Xu;  Chen, Tingting;  Sisi, Zhang;  Sun, Yanling;  Yu, Caixia;  Tang, Bixia;  Zhu, Junwei;  Zhai, Shuang;  Sun, Yubin;  Chen, Qiancheng;  Yang, Xiaoyu;  Zhang, Xin;  Sang, Zhengqi;  Wang, Yonggang;  Zhao, Yilin;  Chen, Huanxin;  Lan, Li;  Wang, Yanqing;  Ma, Yingke;  Jia, Yaokai;  Zheng, Xin-chang;  Chen, Meili;  Dong, Zou;  Zhu, Tongtong;  Ming, Chen;  Niu, Guangyi;  Pan, Rong;  Jing, Wei;  Sang, Jian;  Liu, Chang;  Xiong, Yujia;  Lili, Hao;  Zhang, Mochen;  Wang, Guoliang;  Yi, Lizhi;  Wei, Zhao;  Zong, Wenting;  Wu, Song;  Xiong, Zhuang;  Rujiao, Li;  Zheng, Gong;  Li, Rujiao;  Liu, Lin;  Li, Zhao;  Li, Qianpeng;  Wei, Jing;  Luo, Sicheng;  Wang, Jiajia;  Shi, Yirong;  Zhou, Honghong;  Zhang, Peng;  Song, Tingrui;  Li, Yanyan;  Yang, Fei;  Li, Mengwei;  Li, Zhao-hua;  Kang, Hongen;  Zheng, Xinchang;  Li, Ru-jiao;  Tian, Dongmei;  Liu, Xiaonan;  Li, Cuiping;  Teng, Xufei;  Song, Shuhui;  Zhang, Yang;  Niu, Guangyi;  Zhu, Tongtong;  Zhang, Yuansheng;  Chen, Ruru;  Zhang, Rongqin;  Xu, Feng;  Wang, Yifan;  Ling, Yunchao;  Zhou, Chenfen;  Wang, Haizhou;  Teschendorff, Andrew E.;  He, Yungang;  Zhen, Yang;  Li, Cuiping;  Zhu, Junwei;  Li, Lun;  Li, Na;  Gong, Zheng;  Chen, Meili;  Ying Cui;  Duan, Guangya;  Tong, Jin;  Wu, Gangao;  Huang, Tianhao;  Jin, Enhui;  Zhao, Wei;  Kang, Hailong;  Wang, Zhonghuang;  Zeng, Jingyao;  Chen, Hua;  Li, Mingkun;  Zhao, Wenming;  Ning, Wanshan;  Xue, Yu;  Liu, Yanhu;  Cui, Ying;  Zhou, Qijun;  Liu, Xingyan;  Zhang, Longlong;  Mao, Bingyu;  Zhang, Shihua;  Zhang, Yaping;  Wang, Guodong;  Zhu, Qianghui;  Li, Xin;  Li, Menghua;  Liu, Yuanming;  Luo, Hong;  Wu, Xiaoyuan;  Jing, Haichun;  Pan, Yitong;  Chen, Ming;  Ma, Lina;  Shi, Leisheng;  Li, Mingkun;  Lan, Li;  Bao, Yiming;  Zhao, Wen-ming;  Zuo, Zhixiang;  Ren, Jian;  Zhang, Xinxin;  Xiao, Yun;  Li, Xia;  Liu, Dan;  Zhang, Chi;  Xue, Yu;  Zhao, Zheng;  Jiang, Tao;  Wu, Wanying;  Zhao, Fangqing;  Meng, Xianwen;  Peng, Di;  Luo, Hao;  Gao, Feng;  Lin, Shaofeng;  Liu, Chuijie;  Guo, Anyuan;  Yuan, Hao;  Su, Tianhan;  Zhang, Yong E.;  Zhou, Yincong;  Zhang, Weizhi;  Fu, Shanshan;  Tan, Xiaodan;  Xie, Yubin;  Guo, Guoji;  Wang, Chenwei;  Liao, Xingyu;  Gao, Xin;  Wang, Jianxin;  Xie, Guiyan;  Yuan, Chunhui;  Tian, Feng;  Yang, Dechang;  Tang, Dachao;  Wu, Wenyi;  Gou, Yujie;  Han, Cheng;  Cui, Qinghua;  Li, Xiang Shang;  Li, Chuan-Yun;  Luo, XiaoTong;  Ren, Jia;  Li, Xia
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Genomes of leafy and leafless Platanthera orchids illuminate the evolution of mycoheterotrophy 期刊论文
NATURE PLANTS, 2022, 卷号: 8, 期号: 4, 页码: 373+
作者:  Li, Ming-He;  Liu, Ke-Wei;  Li, Zhen;  Lu, Hsiang-Chia;  Ye, Qin-Liang;  Zhang, Diyang;  Wang, Jie-Yu;  Li, Yu-Feng;  Zhong, Zhi-Ming;  Liu, Xuedie;  Yu, Xia;  Liu, Ding-Kun;  Tu, Xiong-De;  Liu, Bin;  Hao, Yang;  Liao, Xing-Yu;  Jiang, Yu-Ting;  Sun, Wei-Hong;  Chen, Jinliao;  Chen, Yan-Qiong;  Ai, Ye;  Zhai, Jun-Wen;  Wu, Sha-Sha;  Zhou, Zhuang;  Hsiao, Yu-Yun;  Wu, Wan-Lin;  Chen, You-Yi;  Lin, Yu-Fu;  Hsu, Jui-Ling;  Li, Chia-Ying;  Wang, Zhi-Wen;  Zhao, Xiang;  Zhong, Wen-Ying;  Ma, Xiao-Kai;  Ma, Liang;  Huang, Jie;  Chen, Gui-Zhen;  Huang, Ming-Zhong;  Huang, Laiqiang;  Peng, Dong-Hui;  Luo, Yi-Bo;  Zou, Shuang-Quan;  Chen, Shi-Pin;  Lan, Siren;  Tsai, Wen-Chieh;  van de Peer, Yves;  Liu, Zhong-Jian
Adobe PDF(8532Kb)  |  收藏  |  浏览/下载：11/0  |  提交时间：2024/03/07
Spatiotemporal Pattern of Ecosystem Respiration in China Estimated by Integration of Machine Learning With Ecological Understanding 期刊论文
GLOBAL BIOGEOCHEMICAL CYCLES, 2022, 卷号: 36, 期号: 11
作者:  Han, Lang;  Yu, Gui-Rui;  Chen, Zhi;  Zhu, Xian-Jin;  Zhang, Wei-Kang;  Wang, Tie-Jun;  Xu, Li;  Chen, Shi-Ping;  Liu, Shao-Min;  Wang, Hui-Min;  Yan, Jun-Hua;  Tan, Jun-Lei;  Zhang, Fa-Wei;  Zhao, Feng-Hua;  Li, Ying-Nian;  Zhang, Yi-Ping;  Sha, Li-Qing;  Song, Qing-Hai;  Shi, Pei-Li;  Zhu, Jiao-Jun;  Wu, Jia-Bing;  Zhao, Zhong-Hui;  Hao, Yan-Bin;  Ji, Xi-Bin;  Zhao, Liang;  Zhang, Yu-Cui;  Jiang, Shi-Cheng;  Gu, Feng-Xue;  Wu, Zhi-Xiang;  Zhang, Yang-Jian;  Li, Zhou;  Tang, Ya-Kun;  Jia, Bing-Rui;  Dong, Gang;  Gao, Yan-Hong;  Jiang, Zheng-De;  Sun, Dan;  Wang, Jian-Lin;  He, Qi-Hua;  Li, Xin-Hu;  Wang, Fei;  Wei, Wen-Xue;  Deng, Zheng-Miao;  Hao, Xiang-Xiang;  Liu, Xiao-Li;  Zhang, Xi-Feng;  Mo, Xing-Guo;  He, Yong-Tao;  Liu, Xin-Wei;  Du, Hu;  Zhu, Zhi-Lin
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ecosystem respiration  eddy covariance  terrestrial ecosystem  machine learning  substrate  scale extension  
The Bamboo Rhizome Evolution in China Is Driven by Geographical Isolation and Trait Differentiation 期刊论文
FORESTS, 2021, 卷号: 12, 期号: 9
作者:  Gu, Han-Jiao;  Zhang, Can-Can;  Chen, Fu-Sheng;  Huang, Ji-Hong;  Wang, Jin-Song;  Bruelheide, Helge;  Trogisch, Stefan;  Fang, Xiang-Min;  Li, Jian-Jun;  Bu, Wen-Sheng
Adobe PDF(3655Kb)  |  收藏  |  浏览/下载：88/0  |  提交时间：2023/02/24
bamboo  endemism  rhizome evolution rate  latitude  longitude  trait differentiation  
GmPIN-dependent polar auxin transport is involved in soybean nodule development 期刊论文
PLANT CELL, 2021, 卷号: 33, 期号: 9, 页码: 2981-3003
作者:  Gao, Zhen;  Chen, Zhiwei;  Cui, Yuanyuan;  Ke, Meiyu;  Xu, Huifang;  Xu, Qinzhen;  Chen, Jiaomei;  Li, Yang;  Huang, Laimei;  Zhao, Hong;  Huang, Dingquan;  Mai, Siyuan;  Xu, Tao;  Liu, Xiao;  Li, Shujia;  Guan, Yuefeng;  Yang, Wenqiang;  Friml, Jiri;  Petrasek, Jan;  Zhang, Jing;  Chen, Xu
Adobe PDF(3748Kb)  |  收藏  |  浏览/下载：82/0  |  提交时间：2023/02/24
Capturing single-copy nuclear genes, organellar genomes, and nuclear ribosomal DNA from deep genome skimming data for plant phylogenetics: A case study in Vitaceae 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2021, 卷号: 59, 期号: 5, 页码: 1124-1138
作者:  Liu, Bin-Bin;  Ma, Zhi-Yao;  Ren, Chen;  Hodel, Richard G. J.;  Sun, Miao;  Liu, Xiu-Qun;  Liu, Guang-Ning;  Hong, De-Yuan;  Zimmer, Elizabeth A.;  Wen, Jun
Adobe PDF(2650Kb)  |  收藏  |  浏览/下载：69/0  |  提交时间：2023/02/24
deep genome skimming  Hyb-Seq  mitochondrial genes  nuclear ribosomal DNA  single-copy nuclear genes  Vitaceae  
Biogeographic diversification of Mahonia (Berberidaceae): Implications for the origin and evolution of East Asian subtropical evergreen broadleaved forests 期刊论文
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2020, 卷号: 151
作者:  Chen, Xiao-Hong;  Xiang, Kun-Li;  Lian, Lian;  Peng, Huan-Wen;  Erst, Andrey S.;  Xiang, Xiao-Guo;  Chen, Zhi-Duan;  Wang, Wei
Adobe PDF(1765Kb)  |  收藏  |  浏览/下载：120/0  |  提交时间：2022/03/01
Biogeography  East Asian monsoon  Mahonia  Miocene  Phylogeny  Subtropical evergreen broadleaved forest