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Tracing the geographic origin of endangered plant species using transcriptome-derived SNPs: An example of Cathaya argyrophylla 期刊论文
MOLECULAR ECOLOGY RESOURCES, 2023, 卷号: 23, 期号: 4, 页码: 844-854
Authors:  Sun, Jing-Jing;  Xia, Xiao-Mei;  Wei, Xiao-Xin;  Wang, Xiao-Quan
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Cathaya  double-blind trial  geographic traceability  population genetics  RNA-seq  SNPs  
Transcriptomic analysis reveals the role of FOUR LIPS in response to salt stress in rice 期刊论文
PLANT MOLECULAR BIOLOGY, 2022, 卷号: 110, 期号: 1-2, 页码: 37-52
Authors:  Zhang, Chunxia;  Zhang, Jie;  Liu, Huichao;  Qu, Xiaoxiao;  Wang, Junxue;  He, Qixiumei;  Zou, Junjie;  Yang, Kezhen;  Le, Jie
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RNA-seq  ChIP-seq  OsFLP  OsCDKB1  1  Rice  Salt stress  
Identification of long noncoding natural antisense transcripts (lncNATs) correlated with drought stress response in wild rice (Oryza nivara) 期刊论文
BMC GENOMICS, 2021, 卷号: 22, 期号: 1
Authors:  Xu, Yong-Chao;  Zhang, Jie;  Zhang, Dong-Yan;  Nan, Ying-Hui;  Ge, Song;  Guo, Ya-Long
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Drought stress  Long noncoding RNA  O  nivara  Strand-specific RNA-seq  Wild rice  
Genome-wide investigation on transcriptional responses to drought stress in wild and cultivated rice 期刊论文
ENVIRONMENTAL AND EXPERIMENTAL BOTANY, 2021, 卷号: 189
Authors:  Geng, Mu-Fan;  Wang, Xiu-Hua;  Wang, Mei-Xia;  Cai, Zhe;  Meng, Qing-Lin;  Wang, Xin;  Zhou, Lian;  Han, Jing-Dan;  Li, Ji-Long;  Zhang, Fu-Min;  Guo, Ya-Long;  Ge, Song
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Drought stress  RNA-seq  WGCNA  Genomic hotspot  Cultivated and wild rice  
Characterization of Chromatin Accessibility and Gene Expression upon Cold Stress Reveals that the RAV1 Transcription Factor Functions in Cold Response in Vitis Amurensis 期刊论文
PLANT AND CELL PHYSIOLOGY, 2021, 卷号: 62, 期号: 10, 页码: 1615-1629
Authors:  Ren, Chong;  Li, Huayang;  Wang, Zemin;  Dai, Zhanwu;  Lecourieux, Fatma;  Kuang, Yangfu;  Xin, Haiping;  Li, Shaohua;  Liang, Zhenchang
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ATAC-seq  Cold response  RAV1  RNA-seq  Transcription factor  Vitis amurensis  
Gene expression analysis in leaf of Camellia sinensis reveals the response to fluoride 期刊论文
ACTA PHYSIOLOGIAE PLANTARUM, 2021, 卷号: 43, 期号: 7
Authors:  Pan, Junting;  Xing, Anqi;  Zhu, Jiaojiao;  Nong, Shouhua;  Ma, Yuanchun;  Zhu, Xujun;  Fang, Wanping;  Wang, Yuhua
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Camellia sinensis  Fluoride  Gene expression analysis  RNA-Seq  
Grape-RNA: A Database for the Collection, Evaluation, Treatment, and Data Sharing of Grape RNA-Seq Datasets 期刊论文
GENES, 2020, 卷号: 11, 期号: 3
Authors:  Wang, Yi;  Zhang, Rui;  Liang, Zhenchang;  Li, Shaohua
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Grape-RNA  RNA-seq  database  web tools  
Deciphering the high-quality genome sequence of coriander that causes controversial feelings 期刊论文
PLANT BIOTECHNOLOGY JOURNAL, 2020, 卷号: 18, 期号: 6, 页码: 1444-1456
Authors:  Song, Xiaoming;  Wang, Jinpeng;  Li, Nan;  Yu, Jigao;  Meng, Fanbo;  Wei, Chendan;  Liu, Chao;  Chen, Wei;  Nie, Fulei;  Zhang, Zhikang;  Gong, Ke;  Li, Xinyu;  Hu, Jingjing;  Yang, Qihang;  Li, Yuxian;  Li, Chunjin;  Feng, Shuyan;  Guo, He;  Yuan, Jiaqing;  Pei, Qiaoying;  Yu, Tong;  Kang, Xi;  Zhao, Wei;  Lei, Tianyu;  Sun, Pengchuan;  Wang, Li;  Ge, Weina;  Guo, Di;  Duan, Xueqian;  Shen, Shaoqi;  Cui, Chunlin;  Yu, Ying;  Xie, Yangqin;  Zhang, Jin;  Hou, Yue;  Wang, Jianyu;  Wang, Jinyu;  Li, Xiu-Qing;  Paterson, Andrew H.;  Wang, Xiyin
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De novo coriander genome  tetraploid  genome evolution  terpenoid biosynthesis pathway  RNA-Seq  metabolomics  
RNA-seq, de novo transcriptome assembly and flavonoid gene analysis in 13 wild and cultivated berry fruit species with high content of phenolics 期刊论文
BMC GENOMICS, 2019, 卷号: 20, 期号: 1
Authors:  Thole, Vera;  Bassard, Jean-Etienne;  Ramirez-Gonzalez, Ricardo;  Trick, Martin;  Afshar, Bijan Ghasemi;  Breitel, Dario;  Hill, Lionel;  Foito, Alexandre;  Shepherd, Louise;  Freitag, Sabine;  dos Santos, Claudia Nunes;  Menezes, Regina;  Banados, Pilar;  Naesby, Michael;  Wang, Liangsheng;  Sorokin, Artem;  Tikhonova, Olga;  Shelenga, Tatiana;  Stewart, Derek;  Vain, Philippe;  Martin, Cathie
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13 berry fruit species  RNA-seq  de novo assembly  Anthocyanin  Gene expression analysis  Fruit ripening  Transcription factors  MYB  bHLH  WDR  
Transcriptome Analysis Reveals the Mechanism of Fluoride Treatment Affecting Biochemical Components in Camellia sinensis 期刊论文
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2019, 卷号: 20, 期号: 2
Authors:  Zhu, Jiaojiao;  Pan, Junting;  Nong, Shouhua;  Ma, Yuanchun;  Xing, Anqi;  Zhu, Xujun;  Wen, Bo;  Fang, Wanping;  Wang, Yuhua
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Camellia sinensis  fluoride  RNA-Seq  transcriptome  bioactive compounds