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Species delimitation of the liquorice tribe (Leguminosae: Glycyrrhizeae) based on phylogenomic and machine learning analyses 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2023, 卷号: 61, 期号: 1, 页码: 22-41
Authors:  Duan, Lei;  Han, Li-Na;  Liu, Bin-Bin;  Leostrin, Artem;  Harris, A. J.;  Wang, Lin;  Arslan, Emine;  Ertugrul, Kuddisi;  Knyazev, Mikhail;  Hantemirova, Elena;  Wen, Jun;  Chen, Hong-Feng
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character evolution  Glycyrrhiza  machine learning analysis  medicinal group  phylogenomics  species delimitation  
Genomes shed light on the evolution of Begonia, a mega-diverse genus 期刊论文
NEW PHYTOLOGIST, 2022, 卷号: 234, 期号: 1, 页码: 295-310
Authors:  Li, Lingfei;  Chen, Xiaoli;  Fang, Dongming;  Dong, Shanshan;  Guo, Xing;  Li, Na;  Campos-Dominguez, Lucia;  Wang, Wenguang;  Liu, Yang;  Lang, Xiaoan;  Peng, Yang;  Tian, Daike;  Thomas, Daniel C.;  Mu, Weixue;  Liu, Min;  Wu, Chenyu;  Yang, Ting;  Zhang, Suzhou;  Yang, Leilei;  Yang, Jianfen;  Liu, Zhong-Jian;  Zhang, Liangsheng;  Zhang, Xingtan;  Chen, Fei;  Jiao, Yuannian;  Guo, Yalong;  Hughes, Mark;  Wang, Wei;  Liu, Xiaofei;  Zhong, Chunmei;  Li, Airong;  Sahu, Sunil Kumar;  Yang, Huanming;  Wu, Ernest;  Sharbrough, Joel;  Lisby, Michael;  Liu, Xin;  Xu, Xun;  Soltis, Douglas E.;  Van de Peer, Yves;  Kidner, Catherine;  Zhang, Shouzhou;  Liu, Huan
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Begonia  evolution  genomes  introgression  shade adaptation  whole-genome duplication  
Evolution of the CBL and CIPK gene families in Medicago: genome-wide characterization, pervasive duplication, and expression pattern under salt and drought stress 期刊论文
BMC PLANT BIOLOGY, 2022, 卷号: 22, 期号: 1
Authors:  Zhang, Xiao-Xia;  Ren, Xiao-Long;  Qi, Xiao-Tong;  Yang, Zhi-Min;  Feng, Xiao-Lei;  Zhang, Tian;  Wang, Hui-Jie;  Liang, Peng;  Jiang, Qi-Ying;  Yang, Wen-Jun;  Fu, Yuan;  Chen, Min;  Fu, Zhi-Xi;  Xu, Bo
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Calcineurin B-like protein (CBL)  CBL-interacting protein kinase (CIPK)  Gene family evolution  Duplicate genes  Stress response  Medicago  
Phylogeny and evolution of Cupressaceae: Updates on intergeneric relationships and new insights on ancient intergeneric hybridization 期刊论文
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2022, 卷号: 177
Authors:  Liu, Xin-Quan;  Xia, Xiao-Mei;  Chen, Luo;  Wang, Xiao-Quan
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Phylogenomics  Biogeography  Reticulate evolution  Ancient hybridization  Cupressaceae  Conifer  
Genome size evolution of the extant lycophytes and ferns 期刊论文
PLANT DIVERSITY, 2022, 卷号: 44, 期号: 2, 页码: 141-152
Authors:  Wang, Fa-Guo;  Wang, Ai-Hua;  Bai, Cheng-Ke;  Jin, Dong-Mei;  Nie, Li-Yun;  Harris, A. J.;  Che, Le;  Wang, Juan-Juan;  Li, Shi-Yu;  Xu, Lei;  Shen, Hui;  Gu, Yu-Feng;  Shang, Hui;  Duan, Lei;  Zhang, Xian-Chun;  Chen, Hong-Feng;  Yan, Yue-Hong
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Genome size  Ferns  Chromosome numbers  Habitat type  Whole-genome duplications  Evolution  
A lineage-specific arginine in POS1 is required for fruit size control in Physaleae (Solanaceae) via gene co-option 期刊论文
PLANT JOURNAL, 2022, 卷号: 111, 期号: 1, 页码: 183-204
Authors:  Wang, Li;  Liu, Xueyang;  Li, Qiaoru;  Xu, Nan;  He, Chaoying
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co-option  cell expansion  functional evolution  fruit size  POS1  CRF3  Solanaceae  
The expression of demographic costs of reproduction varies among coexisting plants with different life history traits 期刊论文
JOURNAL OF ECOLOGY, 2022, 卷号: 110, 期号: 10, 页码: 2343-2358
Authors:  Sun, Hai-Qin;  Zhou, Ting-Hong;  Sletvold, Nina
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cost of flower maintenance  cost of reproduction  demographic cost  fitness component  flower removal  hand pollination  life-history evolution  trade-off  
A well-supported nuclear phylogeny of Poaceae and implications for the evolution of C4 photosynthesis 期刊论文
MOLECULAR PLANT, 2022, 卷号: 15, 期号: 4, 页码: 755-777
Authors:  Huang, Weichen;  Zhang, Lin;  Columbus, J. Travis;  Hu, Yi;  Zhao, Yiyong;  Tang, Lin;  Guo, Zhenhua;  Chen, Wenli;  McKain, Michael;  Bartlett, Madelaine;  Huang, Chien-Hsun;  Li, De-Zhu;  Ge, Song;  Ma, Hong
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Gramineae  transcriptome  nuclear phylogeny  molecular clock  C4 photosynthesis  ppc gene evolution  
Propagule size and seed development duration: high photosynthate allocation and growth allometry 期刊论文
PLANTA, 2022, 卷号: 255, 期号: 4
Authors:  Yu, Shunli;  Li, Danfeng;  Liu, Canran;  Katz, Ofir
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Evolution  Fruit type  Fruit weight  Growth form  Leaf area  Pedicel cross-sectional area  Seed development time  Seed mass  
Phylogenomic Analysis Reconstructed the Order Matoniales from Paleopolyploidy Veil 期刊论文
PLANTS-BASEL, 2022, 卷号: 11, 期号: 12
Authors:  Shu, Jiang-Ping;  Wang, Hao;  Shen, Hui;  Wang, Rui-Jiang;  Fu, Qiang;  Wang, Yong-Dong;  Jiao, Yuan-Nian;  Yan, Yue-Hong
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ancient polyploidization  ancient radiation  reticulate evolution  mass extinction  ferns  phylogeny  1-to-1 orthologous genes