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Mutational meltdown or controlled chain reaction: The dynamics of rapid plastome evolution in the hyperdiversity of Poaceae 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2023, 卷号: 61, 期号: 2, 页码: 328-344
作者:  Wang, Jie;  Fu, Gao-Fei;  Tembrock, Luke R.;  Liao, Xue-Zhu;  Ge, Song;  Wu, Zhi-Qiang
Adobe PDF(2463Kb)  |  收藏  |  浏览/下载：17/0  |  提交时间：2024/03/07
C-4 photosynthesis  evolutionary rate  inverted repeats  monocots  plastome size  
Stepwise selection of natural variations at CTB2 and CTB4a improves cold adaptation during domestication of japonica rice 期刊论文
NEW PHYTOLOGIST, 2021, 卷号: 231, 期号: 3, 页码: 1056-1072
作者:  Li, Jilong;  Zeng, Yawen;  Pan, Yinghua;  Zhou, Lei;  Zhang, Zhanying;  Guo, Haifeng;  Lou, Qijin;  Shui, Guanghou;  Huang, Hanguang;  Tian, He;  Guo, Yongmei;  Yuan, Pingrong;  Yang, Hong;  Pan, Guojun;  Wang, Ruiying;  Zhang, Hongliang;  Yang, Shuhua;  Guo, Yan;  Ge, Song;  Li, Jinjie;  Li, Zichao
Adobe PDF(2933Kb)  |  收藏  |  浏览/下载：76/0  |  提交时间：2023/02/24
cold adaptation  de novo mutation  rice  standing variation  stepwise selection  
Divergence in flowering time is a major component contributing to reproductive isolation between two wild rice species (Oryza rufipogon and O. nivara) 期刊论文
SCIENCE CHINA-LIFE SCIENCES, 2020, 卷号: 63, 期号: 11, 页码: 1714-1724
作者:  Xu, Xun;  Meng, Qing-Lin;  Geng, Mu-Fan;  Ren, Ning-Ning;  Zhou, Lian;  Du, Yu-Su;  Cai, Zhe;  Wang, Mei-Xia;  Wang, Xin;  Wang, Xiu-Hua;  Han, Jing-Dan;  Jiang, Shuai;  Jing, Chun-Yan;  Liu, Rong;  Zheng, Xiao-Ming;  Yang, Qing-Wen;  Zhang, Fu-Min;  Ge, Song
Adobe PDF(899Kb)  |  收藏  |  浏览/下载：120/0  |  提交时间：2022/03/01
reproductive isolation  flowering time  speciation  adaptation  Oryza species  
Resequencing 545 ginkgo genomes across the world reveals the evolutionary history of the living fossil 期刊论文
NATURE COMMUNICATIONS, 2019, 卷号: 10
作者:  Zhao, Yun-Peng;  Fan, Guangyi;  Yin, Ping-Ping;  Sun, Shuai;  Li, Ning;  Hong, Xiaoning;  Hu, Gang;  Zhang, He;  Zhang, Fu-Min;  Han, Jing-Dan;  Hao, Ya-Jun;  Xu, Qiwu;  Yang, Xianwei;  Xia, Wenjie;  Chen, Wenbin;  Lin, Han-Yang;  Zhang, Rui;  Chen, Jiang;  Zheng, Xiao-Ming;  Lee, Simon Ming-Yuen;  Lee, Joongku;  Uehara, Koichi;  Wang, Jian;  Yang, Huanming;  Fu, Cheng-Xin;  Liu, Xin;  Xu, Xun;  Ge, Song
Adobe PDF(2992Kb)  |  收藏  |  浏览/下载：123/0  |  提交时间：2022/01/06
Parallel Speciation of Wild Rice Associated with Habitat Shifts 期刊论文
MOLECULAR BIOLOGY AND EVOLUTION, 2019, 卷号: 36, 期号: 5, 页码: 875-889
作者:  Cai, Zhe;  Zhou, Lian;  Ren, Ning-Ning;  Xu, Xun;  Liu, Rong;  Huang, Lei;  Zheng, Xiao-Ming;  Meng, Qing-Lin;  Du, Yu-Su;  Wang, Mei-Xia;  Geng, Mu-Fan;  Chen, Wen-Li;  Jing, Chun-Yan;  Zou, Xin-Hui;  Guo, Jie;  Chen, Cheng-Bin;  Zeng, Hua-Zhong;  Liang, Yun-Tao;  Wei, Xing-Hua;  Guo, Ya-Long;  Zhou, Hai-Fei;  Zhang, Fu-Min;  Ge, Song
Adobe PDF(887Kb)  |  收藏  |  浏览/下载：2619/0  |  提交时间：2022/01/06
parallel speciation  reproductive isolation  adaptation  divergent selection  wild rice  
Genomic variation associated with local adaptation of weedy rice during de-domestication 期刊论文
NATURE COMMUNICATIONS, 2017, 卷号: 8
作者:  Qiu, Jie;  Zhou, Yongjun;  Mao, Lingfeng;  Ye, Chuyu;  Wang, Weidi;  Zhang, Jianping;  Yu, Yongyi;  Fu, Fei;  Wang, Yunfei;  Qian, Feijian;  Qi, Ting;  Wu, Sanling;  Sultana, Most Humaira;  Cao, Ya-Nan;  Wang, Yu;  Timko, Michael P.;  Ge, Song;  Fan, Longjiang;  Lu, Yongliang
Adobe PDF(551Kb)  |  收藏  |  浏览/下载：109/0  |  提交时间：2022/03/28
Widespread and Adaptive Alterations in Genome-Wide Gene Expression Associated with Ecological Divergence of Two Oryza Species 期刊论文
MOLECULAR BIOLOGY AND EVOLUTION, 2016, 卷号: 33, 期号: 1, 页码: 62-78
作者:  Guo, Jie;  Liu, Rong;  Huang, Lei;  Zheng, Xiao-Ming;  Liu, Ping-Li;  Du, Yu-Su;  Cai, Zhe;  Zhou, Lian;  Wei, Xing-Hua;  Zhang, Fu-Min;  Ge, Song
Adobe PDF(782Kb)  |  收藏  |  浏览/下载：82/0  |  提交时间：2022/07/08
ecological speciation  expression evolution  adaptation  wild rice  
Divergence and adaptive evolution of the gibberellin oxidase genes in plants 期刊论文
BMC EVOLUTIONARY BIOLOGY, 2015, 卷号: 15
作者:  Huang, Yuan;  Wang, Xi;  Ge, Song;  Rao, Guang-Yuan
Adobe PDF(2768Kb)  |  收藏  |  浏览/下载：64/0  |  提交时间：2022/09/13
Characteristic motif  Functional divergence  Gibberellin  Phytohormones  Positive selection  2-oxoglutarate-dependent dioxygenase  
Nucleotide diversity of 11S seed storage protein gene and its implications for ecological adaptation of Oryza nivara 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2013, 卷号: 51, 期号: 6, 页码: 641-651
作者:  Huang, Lei;  Du, Yu-Su;  Zheng, Xiao-Ming;  Liu, Rong;  Zhou, Hai-Fei;  Ge, Song
Adobe PDF(388Kb)  |  收藏  |  浏览/下载：40/0  |  提交时间：2023/04/25
adaptive evolution  nucleotide diversity  Oryza nivara  Oryza rufipogon  11S seed storage protein gene  
Association of functional nucleotide polymorphisms at DTH2 with the northward expansion of rice cultivation in Asia 期刊论文
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2013, 卷号: 110, 期号: 8, 页码: 2775-2780
作者:  Wu, Weixun;  Zheng, Xiao-Ming;  Lu, Guangwen;  Zhong, Zhengzheng;  Gao, He;  Chen, Liping;  Wu, Chuanyin;  Wang, Hong-Jun;  Wang, Qi;  Zhou, Kunneng;  Wang, Jiu-Lin;  Wu, Fuqing;  Zhang, Xin;  Guo, Xiuping;  Cheng, Zhijun;  Lei, Cailin;  Lin, Qibing;  Jiang, Ling;  Wang, Haiyang;  Ge, Song;  Wan, Jianmin
Adobe PDF(803Kb)  |  收藏  |  浏览/下载：52/0  |  提交时间：2023/04/25