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Integrated phylogenomic analyses unveil reticulate evolution in Parthenocissus (Vitaceae), highlighting speciation dynamics in the Himalayan-Hengduan Mountains 期刊论文
NEW PHYTOLOGIST, 2023, 卷号: 238, 期号: 2, 页码: 888-903
作者:  Yu, Jinren;  Niu, Yanting;  You, Yichen;  Cox, Cymon J.;  Barrett, Russell L.;  Trias-Blasi, Anna;  Guo, Jing;  Wen, Jun;  Lu, Limin;  Chen, Zhiduan
Adobe PDF(4450Kb)  |  收藏  |  浏览/下载：36/0  |  提交时间：2024/03/07
biogeography  comprehensive approach  Himalayan-Hengduan Mountains region  Parthenocissus  phylogenetic discordance  reticulation  speciation reversal  
Species delimitation of the liquorice tribe (Leguminosae: Glycyrrhizeae) based on phylogenomic and machine learning analyses 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2023, 卷号: 61, 期号: 1, 页码: 22-41
作者:  Duan, Lei;  Han, Li-Na;  Liu, Bin-Bin;  Leostrin, Artem;  Harris, A. J.;  Wang, Lin;  Arslan, Emine;  Ertugrul, Kuddisi;  Knyazev, Mikhail;  Hantemirova, Elena;  Wen, Jun;  Chen, Hong-Feng
Adobe PDF(1597Kb)  |  收藏  |  浏览/下载：29/0  |  提交时间：2024/03/07
character evolution  Glycyrrhiza  machine learning analysis  medicinal group  phylogenomics  species delimitation  
Genome size evolution of the extant lycophytes and ferns 期刊论文
PLANT DIVERSITY, 2022, 卷号: 44, 期号: 2, 页码: 141-152
作者:  Wang, Fa-Guo;  Wang, Ai-Hua;  Bai, Cheng-Ke;  Jin, Dong-Mei;  Nie, Li-Yun;  Harris, A. J.;  Che, Le;  Wang, Juan-Juan;  Li, Shi-Yu;  Xu, Lei;  Shen, Hui;  Gu, Yu-Feng;  Shang, Hui;  Duan, Lei;  Zhang, Xian-Chun;  Chen, Hong-Feng;  Yan, Yue-Hong
Adobe PDF(2515Kb)  |  收藏  |  浏览/下载：16/0  |  提交时间：2024/03/07
Genome size  Ferns  Chromosome numbers  Habitat type  Whole-genome duplications  Evolution  
A well-supported nuclear phylogeny of Poaceae and implications for the evolution of C4 photosynthesis 期刊论文
MOLECULAR PLANT, 2022, 卷号: 15, 期号: 4, 页码: 755-777
作者:  Huang, Weichen;  Zhang, Lin;  Columbus, J. Travis;  Hu, Yi;  Zhao, Yiyong;  Tang, Lin;  Guo, Zhenhua;  Chen, Wenli;  McKain, Michael;  Bartlett, Madelaine;  Huang, Chien-Hsun;  Li, De-Zhu;  Ge, Song;  Ma, Hong
Adobe PDF(3240Kb)  |  收藏  |  浏览/下载：10/0  |  提交时间：2024/03/07
Gramineae  transcriptome  nuclear phylogeny  molecular clock  C4 photosynthesis  ppc gene evolution  
Phylogenomic conflict analyses in the apple genus Malus s.l. reveal widespread hybridization and allopolyploidy driving diversification, with insights into the complex biogeographic history in the Northern Hemisphere 期刊论文
JOURNAL OF INTEGRATIVE PLANT BIOLOGY, 2022, 卷号: 64, 期号: 5, 页码: 1020-1043
作者:  Liu, Bin-Bin;  Ren, Chen;  Kwak, Myounghai;  Hodel, Richard G. J.;  Xu, Chao;  He, Jian;  Zhou, Wen-Bin;  Huang, Chien-Hsun;  Ma, Hong;  Qian, Guan-Ze;  Hong, De-Yuan;  Wen, Jun
Adobe PDF(3053Kb)  |  收藏  |  浏览/下载：16/0  |  提交时间：2024/03/07
deep genome skimming  genomic discordance  historical biogeography  massive extinction  reticulate evolution  single-copy nuclear genes  
The Welwitschia genome reveals a unique biology underpinning extreme longevity in deserts 期刊论文
NATURE COMMUNICATIONS, 2021, 卷号: 12, 期号: 1
作者:  Wan, Tao;  Liu, Zhiming;  Leitch, Ilia J.;  Xin, Haiping;  Maggs-Kolling, Gillian;  Gong, Yanbing;  Li, Zhen;  Marais, Eugene;  Liao, Yiying;  Dai, Can;  Liu, Fan;  Wu, Qijia;  Song, Chi;  Zhou, Yadong;  Huang, Weichang;  Jiang, Kai;  Wang, Qi;  Yang, Yong;  Zhong, Zhixiang;  Yang, Ming;  Yan, Xue;  Hu, Guangwan;  Hou, Chen;  Su, Yingjuan;  Feng, Shixiu;  Yang, Ji;  Yan, Jijun;  Chu, Jinfang;  Chen, Fan;  Ran, Jinhua;  Wang, Xiaoquan;  Van de Peer, Yves;  Leitch, Andrew R.;  Wang, Qingfeng
Adobe PDF(9341Kb)  |  收藏  |  浏览/下载：78/0  |  提交时间：2023/02/24
Capturing single-copy nuclear genes, organellar genomes, and nuclear ribosomal DNA from deep genome skimming data for plant phylogenetics: A case study in Vitaceae 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2021, 卷号: 59, 期号: 5, 页码: 1124-1138
作者:  Liu, Bin-Bin;  Ma, Zhi-Yao;  Ren, Chen;  Hodel, Richard G. J.;  Sun, Miao;  Liu, Xiu-Qun;  Liu, Guang-Ning;  Hong, De-Yuan;  Zimmer, Elizabeth A.;  Wen, Jun
Adobe PDF(2650Kb)  |  收藏  |  浏览/下载：70/0  |  提交时间：2023/02/24
deep genome skimming  Hyb-Seq  mitochondrial genes  nuclear ribosomal DNA  single-copy nuclear genes  Vitaceae  
New Guinea has the world's richest island flora 期刊论文
NATURE, 2020, 卷号: 584, 期号: 7822, 页码: 579-583
作者:  Camara-Leret, Rodrigo;  Frodin, David G.;  Adema, Frits;  Anderson, Christiane;  Appelhans, Marc S.;  Argent, George;  Guerrero, Susana Arias;  Ashton, Peter;  Baker, William J.;  Barfod, Anders S.;  Barrington, David;  Borosova, Renata;  Bramley, Gemma L. C.;  Briggs, Marie;  Buerki, Sven;  Cahen, Daniel;  Callmander, Martin W.;  Cheek, Martin;  Chen, Cheng-Wei;  Conn, Barry J.;  Coode, Mark J. E.;  Darbyshire, Iain;  Dawson, Sally;  Dransfield, John;  Drinkell, Clare;  Duyfjes, Brigitta;  Ebihara, Atsushi;  Ezedin, Zacky;  Fu, Long-Fei;  Gideon, Osia;  Girmansyah, Deden;  Govaerts, Rafael;  Fortune-Hopkins, Helen;  Hassemer, Gustavo;  Hay, Alistair;  Heatubun, Charlie D.;  Hind, D. J. Nicholas;  Hoch, Peter;  Homot, Peter;  Hovenkamp, Peter;  Hughes, Mark;  Jebb, Matthew;  Jennings, Laura;  Jimbo, Tiberius;  Kessler, Michael;  Kiew, Ruth;  Knapp, Sandra;  Lamei, Penniel;  Lehnert, Marcus;  Lewis, Gwilym P.;  Linder, Hans Peter;  Lindsay, Stuart;  Low, Yee Wen;  Lucas, Eve;  Mancera, Jeffrey P.;  Monro, Alexandre K.;  Moore, Alison;  Middleton, David J.;  Nagamasu, Hidetoshi;  Newman, Mark F.;  Lughadha, Eimear Nic;  Melo, Pablo H. A.;  Ohlsen, Daniel J.;  Pannell, Caroline M.;  Parris, Barbara;  Pearce, Laura;  Penneys, Darin S.;  Perrie, Leon R.;  Petoe, Peter;  Poulsen, Axel Dalberg;  Prance, Ghillean T.;  Quakenbush, J. Peter;  Raes, Niels;  Rodda, Michele;  Rogers, Zachary S.;  Schuiteman, Andre;  Schwartsburd, Pedro;  Scotland, Robert W.;  Simmons, Mark P.;  Simpson, David A.;  Stevens, Peter;  Sundue, Michael;  Testo, Weston;  Trias-Blasi, Anna;  Turner, Ian;  Utteridge, Timothy;  Walsingham, Lesley;  Webber, Bruce L.;  Wei, Ran;  Weiblen, George D.;  Weigend, Maximilian;  Weston, Peter;  de Wilde, Willem;  Wilkie, Peter;  Wilmot-Dear, Christine M.;  Wilson, Hannah P.;  Wood, John R., I;  Zhang, Li-Bing;  van Welzen, Peter C.
Adobe PDF(7100Kb)  |  收藏  |  浏览/下载：139/0  |  提交时间：2022/03/01
The Kobresia pygmaea ecosystem of the Tibetan highlands - Origin, functioning and degradation of the world's largest pastoral alpine ecosystem Kobresia pastures of Tibet 期刊论文
SCIENCE OF THE TOTAL ENVIRONMENT, 2019, 卷号: 648, 页码: 754-771
作者:  Miehe, Georg;  Schleuss, Per-Marten;  Seeber, Elke;  Babel, Wolfgang;  Biermann, Tobias;  Braendle, Martin;  Chen, Fahu;  Coners, Heinz;  Foken, Thomas;  Gerken, Tobias;  Graf, Hans-F.;  Guggenberger, Georg;  Hafner, Silke;  Holzapfel, Maika;  Ingrisch, Johannes;  Kuzyakov, Yakov;  Lai, Zhongping;  Lehnert, Lukas;  Leuschner, Christoph;  Li, Xiaogang;  Liu, Jianquan;  Liu, Shibin;  Ma, Yaoming;  Miehe, Sabine;  Mosbrugger, Volker;  Noltie, Henry J.;  Schmidt, Joachim;  Spielvogel, Sandra;  Unteregelsbacher, Sebastian;  Wang, Yun;  Willinghoefer, Sandra;  Xu, Xingliang;  Yang, Yongping;  Zhang, Shuren;  Opgenoorth, Lars;  Wesche, Karsten
Adobe PDF(6490Kb)  |  收藏  |  浏览/下载：197/0  |  提交时间：2022/01/06
Alpine meadow  Alpine plant ecology  Carbon cycle and sequestration  Carex parvula  Grazing ecology  Hydrological cycle  Nutrient cycles  Paleo-environment  Qinghai-Tibet Plateau  Rangeland management  
The genomes of pecan and Chinese hickory provide insights into Carya evolution and nut nutrition 期刊论文
GIGASCIENCE, 2019, 卷号: 8, 期号: 5
作者:  Huang, Youjun;  Xiao, Lihong;  Zhang, Zhongren;  Zhang, Rui;  Wang, Zhengjia;  Huang, Chunying;  Huang, Ren;  Luan, Yumeng;  Fan, Tongqiang;  Wang, Jianhua;  Shen, Chen;  Zhang, Shenmei;  Wang, Xinwang;  Randall, Jennifer;  Zheng, Bingsong;  Wu, Jiasheng;  Zhang, Qixiang;  Xia, Guohua;  Xu, Chuanmei;  Chen, Ming;  Zhang, Liangsheng;  Jiang, Wenkai;  Gao, Lizhi;  Chen, Zhiduan;  Leslie, Charles A.;  Grauke, L. J.;  Huang, Jianqin
Adobe PDF(6315Kb)  |  收藏  |  浏览/下载：100/0  |  提交时间：2022/01/06
Carya  pecan  Chinese hickory  whole-genome sequence  adaptive evolution  nutritional value  genetic improvement