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m6A-mediated regulation of crop development and stress responses 期刊论文
PLANT BIOTECHNOLOGY JOURNAL, 2022, 卷号: 20, 期号: 8, 页码: 1447-1455
作者:  Zhou, Leilei;  Gao, Guangtong;  Tang, Renkun;  Wang, Weihao;  Wang, Yuying;  Tian, Shiping;  Qin, Guozheng
Adobe PDF(855Kb)  |  收藏  |  浏览/下载：16/0  |  提交时间：2024/03/07
N-6-methyladenosine  m(6)A machineries  crop development  stress responses  crop improvement  
Stepwise selection of natural variations at CTB2 and CTB4a improves cold adaptation during domestication of japonica rice 期刊论文
NEW PHYTOLOGIST, 2021, 卷号: 231, 期号: 3, 页码: 1056-1072
作者:  Li, Jilong;  Zeng, Yawen;  Pan, Yinghua;  Zhou, Lei;  Zhang, Zhanying;  Guo, Haifeng;  Lou, Qijin;  Shui, Guanghou;  Huang, Hanguang;  Tian, He;  Guo, Yongmei;  Yuan, Pingrong;  Yang, Hong;  Pan, Guojun;  Wang, Ruiying;  Zhang, Hongliang;  Yang, Shuhua;  Guo, Yan;  Ge, Song;  Li, Jinjie;  Li, Zichao
Adobe PDF(2933Kb)  |  收藏  |  浏览/下载：76/0  |  提交时间：2023/02/24
cold adaptation  de novo mutation  rice  standing variation  stepwise selection  
Genome-wide investigation on transcriptional responses to drought stress in wild and cultivated rice 期刊论文
ENVIRONMENTAL AND EXPERIMENTAL BOTANY, 2021, 卷号: 189
作者:  Geng, Mu-Fan;  Wang, Xiu-Hua;  Wang, Mei-Xia;  Cai, Zhe;  Meng, Qing-Lin;  Wang, Xin;  Zhou, Lian;  Han, Jing-Dan;  Li, Ji-Long;  Zhang, Fu-Min;  Guo, Ya-Long;  Ge, Song
Adobe PDF(3006Kb)  |  收藏  |  浏览/下载：80/0  |  提交时间：2023/02/24
Drought stress  RNA-seq  WGCNA  Genomic hotspot  Cultivated and wild rice  
N-6-methyladenosine RNA modification regulates strawberry fruit ripening in an ABA-dependent manner 期刊论文
GENOME BIOLOGY, 2021, 卷号: 22, 期号: 1
作者:  Zhou, Leilei;  Tang, Renkun;  Li, Xiaojing;  Tian, Shiping;  Li, Bingbing;  Qin, Guozheng
Adobe PDF(3413Kb)  |  收藏  |  浏览/下载：115/0  |  提交时间：2023/02/24
m(6)A methylation  m(6)A methyltransferase  Abscisic acid  mRNA stability  Translation efficiency  Strawberry  Fruit ripening  
Divergence in flowering time is a major component contributing to reproductive isolation between two wild rice species (Oryza rufipogon and O. nivara) 期刊论文
SCIENCE CHINA-LIFE SCIENCES, 2020, 卷号: 63, 期号: 11, 页码: 1714-1724
作者:  Xu, Xun;  Meng, Qing-Lin;  Geng, Mu-Fan;  Ren, Ning-Ning;  Zhou, Lian;  Du, Yu-Su;  Cai, Zhe;  Wang, Mei-Xia;  Wang, Xin;  Wang, Xiu-Hua;  Han, Jing-Dan;  Jiang, Shuai;  Jing, Chun-Yan;  Liu, Rong;  Zheng, Xiao-Ming;  Yang, Qing-Wen;  Zhang, Fu-Min;  Ge, Song
Adobe PDF(899Kb)  |  收藏  |  浏览/下载：120/0  |  提交时间：2022/03/01
reproductive isolation  flowering time  speciation  adaptation  Oryza species  
The FLUXNET2015 dataset and the ONEFlux processing pipeline for eddy covariance data 期刊论文
SCIENTIFIC DATA, 2020, 卷号: 7, 期号: 1
作者:  Pastorello, Gilberto;  Trotta, Carlo;  Canfora, Eleonora;  Chu, Housen;  Christianson, Danielle;  Cheah, You-Wei;  Poindexter, Cristina;  Chen, Jiquan;  Elbashandy, Abdelrahman;  Humphrey, Marty;  Isaac, Peter;  Polidori, Diego;  Ribeca, Alessio;  van Ingen, Catharine;  Zhang, Leiming;  Amiro, Brian;  Ammann, Christof;  Arain, M. Altaf;  Ardo, Jonas;  Arkebauer, Timothy;  Arndt, Stefan K.;  Arriga, Nicola;  Aubinet, Marc;  Aurela, Mika;  Baldocchi, Dennis;  Barr, Alan;  Beamesderfer, Eric;  Marchesini, Luca Belelli;  Bergeron, Onil;  Beringer, Jason;  Bernhofer, Christian;  Berveiller, Daniel;  Billesbach, Dave;  Black, Thomas Andrew;  Blanken, Peter D.;  Bohrer, Gil;  Boike, Julia;  Bolstad, Paul V.;  Bonal, Damien;  Bonnefond, Jean-Marc;  Bowling, David R.;  Bracho, Rosvel;  Brodeur, Jason;  Bruemmer, Christian;  Buchmann, Nina;  Burban, Benoit;  Burns, Sean P.;  Buysse, Pauline;  Cale, Peter;  Cavagna, Mauro;  Cellier, Pierre;  Chen, Shiping;  Chini, Isaac;  Christensen, Torben R.;  Cleverly, James;  Collalti, Alessio;  Consalvo, Claudia;  Cook, Bruce D.;  Cook, David;  Coursolle, Carole;  Cremonese, Edoardo;  Curtis, Peter S.;  D'Andrea, Ettore;  da Rocha, Humberto;  Dai, Xiaoqin;  Davis, Kenneth J.;  De Cinti, Bruno;  de Grandcourt, Agnes;  De Ligne, Anne;  De Oliveira, Raimundo C.;  Delpierre, Nicolas;  Desai, Ankur R.;  Di Bella, Carlos Marcelo;  di Tommasi, Paul;  Dolman, Han;  Domingo, Francisco;  Dong, Gang;  Dore, Sabina;  Duce, Pierpaolo;  Dufrene, Eric;  Dunn, Allison;  Dusek, Jiri;  Eamus, Derek;  Eichelmann, Uwe;  ElKhidir, Hatim Abdalla M.;  Eugster, Werner;  Ewenz, Cacilia M.;  Ewers, Brent;  Famulari, Daniela;  Fares, Silvano;  Feigenwinter, Iris;  Feitz, Andrew;  Fensholt, Rasmus;  Filippa, Gianluca;  Fischer, Marc;  Frank, John;  Galvagno, Marta;  Gharun, Mana;  Gianelle, Damiano;  Gielen, Bert;  Gioli, Beniamino;  Gitelson, Anatoly;  Goded, Ignacio;  Goeckede, Mathias;  Goldstein, Allen H.;  Gough, Christopher M.;  Goulden, Michael L.;  Graf, Alexander;  Griebel, Anne;  Gruening, Carsten;  Gruenwald, Thomas;  Hammerle, Albin;  Han, Shijie;  Han, Xingguo;  Hansen, Birger Ulf;  Hanson, Chad;  Hatakka, Juha;  He, Yongtao;  Hehn, Markus;  Heinesch, Bernard;  Hinko-Najera, Nina;  Hoertnagl, Lukas;  Hutley, Lindsay;  Ibrom, Andreas;  Ikawa, Hiroki;  Jackowicz-Korczynski, Marcin;  Janous, Dalibor;  Jans, Wilma;  Jassal, Rachhpal;  Jiang, Shicheng;  Kato, Tomomichi;  Khomik, Myroslava;  Klatt, Janina;  Knohl, Alexander;  Knox, Sara;  Kobayashi, Hideki;  Koerber, Georgia;  Kolle, Olaf;  Kosugi, Yoshiko;  Kotani, Ayumi;  Kowalski, Andrew;  Kruijt, Bart;  Kurbatova, Julia;  Kutsch, Werner L.;  Kwon, Hyojung;  Launiainen, Samuli;  Laurila, Tuomas;  Law, Bev;  Leuning, Ray;  Li, Yingnian;  Liddell, Michael;  Limousin, Jean-Marc;  Lion, Marryanna;  Liska, Adam J.;  Lohila, Annalea;  Lopez-Ballesteros, Ana;  Lopez-Blanco, Efren;  Loubet, Benjamin;  Loustau, Denis;  Lucas-Moffat, Antje;  Lueers, Johannes;  Ma, Siyan;  Macfarlane, Craig;  Magliulo, Vincenzo;  Maier, Regine;  Mammarella, Ivan;  Manca, Giovanni;  Marcolla, Barbara;  Margolis, Hank A.;  Marras, Serena;  Massman, William;  Mastepanov, Mikhail;  Matamala, Roser;  Matthes, Jaclyn Hatala;  Mazzenga, Francesco;  McCaughey, Harry;  McHugh, Ian;  McMillan, Andrew M. S.;  Merbold, Lutz;  Meyer, Wayne;  Meyers, Tilden;  Miller, Scott D.;  Minerbi, Stefano;  Moderow, Uta;  Monson, Russell K.;  Montagnani, Leonardo;  Moore, Caitlin E.;  Moors, Eddy;  Moreaux, Virginie;  Moureaux, Christine;  Munger, J. William;  Nakai, Taro;  Neirynck, Johan;  Nesic, Zoran;  Nicolini, Giacomo;  Noormets, Asko;  Northwood, Matthew;  Nosetto, Marcelo;  Nouvellon, Yann;  Novick, Kimberly;  Oechel, Walter;  Olesen, Jorgen Eivind;  Ourcival, Jean-Marc;  Papuga, Shirley A.;  Parmentier, Frans-Jan;  Paul-Limoges, Eugenie;  Pavelka, Marian;  Peichl, Matthias;  Pendall, Elise;  Phillips, Richard P.;  Pilegaard, Kim;  Pirk, Norbert;  Posse, Gabriela;  Powell, Thomas;  Prasse, Heiko;  Prober, Suzanne M.;  Rambal, Serge;  Rannik, Ullar;  Raz-Yaseef, Naama;  Reed, David;  de Dios, Victor Resco;  Restrepo-Coupe, Natalia;  Reverter, Borja R.;  Roland, Marilyn;  Sabbatini, Simone;  Sachs, Torsten;  Saleska, Scott R.;  Sanchez-Canete, Enrique P.;  Sanchez-Mejia, Zulia M.;  Schmid, Hans Peter;  Schmidt, Marius;  Schneider, Karl;  Schrader, Frederik;  Schroder, Ivan;  Scott, Russell L.;  Sedlak, Pavel;  Serrano-Ortiz, Penelope;  Shao, Changliang;  Shi, Peili;  Shironya, Ivan;  Siebicke, Lukas;  Sigut, Ladislav;  Silberstein, Richard;  Sirca, Costantino;  Spano, Donatella;  Steinbrecher, Rainer;  Stevens, Robert M.;  Sturtevant, Cove;  Suyker, Andy;  Tagesson, Torbern;  Takanashi, Satoru;  Tang, Yanhong;  Tapper, Nigel;  Thom, Jonathan;  Tiedemann, Frank;  Tomassucci, Michele;  Tuovinen, Juha-Pekka;  Urbanski, Shawn;  Valentini, Riccardo;  van der Molen, Michiel;  van Gorsel, Eva;  van Huissteden, Ko;  Varlagin, Andrej;  Verfaillie, Joseph;  Vesala, Timo;  Vincke, Caroline;  Vitale, Domenico;  Vygodskaya, Natalia;  Walker, Jeffrey P.;  Walter-Shea, Elizabeth;  Wang, Huimin;  Weber, Robin;  Westermann, Sebastian;  Wille, Christian;  Wofsy, Steven;  Wohlfahrt, Georg;  Wolf, Sebastian;  Woodgate, William;  Li, Yuelin;  Zampedri, Roberto;  Zhang, Junhui;  Zhou, Guoyi;  Zona, Donatella;  Agarwal, Deb;  Biraud, Sebastien;  Torn, Margaret;  Papale, Dario
Adobe PDF(2742Kb)  |  收藏  |  浏览/下载：340/0  |  提交时间：2022/03/01
RNA methylomes reveal the m(6)A-mediated regulation of DNA demethylase gene SlDML2 in tomato fruit ripening 期刊论文
GENOME BIOLOGY, 2019, 卷号: 20, 期号: 1
作者:  Zhou, Leilei;  Tian, Shiping;  Qin, Guozheng
Adobe PDF(8580Kb)  |  收藏  |  浏览/下载：130/0  |  提交时间：2022/01/06
Fruit ripening  DNA methylation  mRNA m(6)A methylation  m(6)A RNA methylome  RNA demethylase SlALKBH2  DNA demethylase SlDML2  Colorless non-ripening  Tomato  
Parallel Speciation of Wild Rice Associated with Habitat Shifts 期刊论文
MOLECULAR BIOLOGY AND EVOLUTION, 2019, 卷号: 36, 期号: 5, 页码: 875-889
作者:  Cai, Zhe;  Zhou, Lian;  Ren, Ning-Ning;  Xu, Xun;  Liu, Rong;  Huang, Lei;  Zheng, Xiao-Ming;  Meng, Qing-Lin;  Du, Yu-Su;  Wang, Mei-Xia;  Geng, Mu-Fan;  Chen, Wen-Li;  Jing, Chun-Yan;  Zou, Xin-Hui;  Guo, Jie;  Chen, Cheng-Bin;  Zeng, Hua-Zhong;  Liang, Yun-Tao;  Wei, Xing-Hua;  Guo, Ya-Long;  Zhou, Hai-Fei;  Zhang, Fu-Min;  Ge, Song
Adobe PDF(887Kb)  |  收藏  |  浏览/下载：2622/0  |  提交时间：2022/01/06
parallel speciation  reproductive isolation  adaptation  divergent selection  wild rice  
Liriodendron genome sheds light on angiosperm phylogeny and species-pair differentiation 期刊论文
NATURE PLANTS, 2019, 卷号: 5, 期号: 1, 页码: 18-25
作者:  Chen, Jinhui;  Hao, Zhaodong;  Guang, Xuanmin;  Zhao, Chenxi;  Wang, Pengkai;  Xue, Liangjiao;  Zhu, Qihui;  Yang, Linfeng;  Sheng, Yu;  Zhou, Yanwei;  Xu, Haibin;  Xie, Hongqing;  Long, Xiaofei;  Zhang, Jin;  Wang, Zhangrong;  Shi, Mingming;  Lu, Ye;  Liu, Siqin;  Guan, Lanhua;  Zhu, Qianhua;  Yang, Liming;  Ge, Song;  Cheng, Tielong;  Laux, Thomas;  Gao, Qiang;  Peng, Ye;  Liu, Na;  Yang, Sihai;  Shi, Jisen
Adobe PDF(3229Kb)  |  收藏  |  浏览/下载：152/0  |  提交时间：2022/01/06
Population genetics and evolutionary history of Miscanthus species in China 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2019, 卷号: 57, 期号: 5, 页码: 530-542
作者:  Li, Shan-Shan;  Zhou, Hai-Fei;  Chen, Wen-Li;  Yan, Juan;  Cai, Zhe;  Wei, Ruo-Xun;  Chen, Chih-Hui;  Han, Bin;  Li, Jian-Qiang;  Sang, Tao;  Ge, Song
Adobe PDF(1772Kb)  |  收藏  |  浏览/下载：140/0  |  提交时间：2022/01/06
energy crop  genetic structure  Miscanthus  population dynamics  speciation